Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_014636.1 Length=225268 Score E Sequences producing significant alignments: (Bits) Value seq2789 187 4e-42 seq2305 84.2 3e-11 >seq2789 Length=15484 Score = 187 bits (206), Expect = 4e-42 Identities = 1154/1811 (64%), Gaps = 70/1811 (4%) Strand=Plus/Plus Query 123221 ATGTTTGACACGACGCTGGACTTCGTCCTGTTTGCCGACGTTAAATGCGCGAGATCCAGG 123280 ||| || || | || || ||||| || ||||| || ||||| | | || |||| Sbjct 2102 ATGCTTAACTCTACTTTGAACTTCTTCTTGTTTTCCTTTATTAAACGGCCTTGAATCAGG 2161 Query 123281 GTTACCCAAATACCCACAGACGCGACGAATAACGTTCATCTTACGGTCATCGTGATTGCC 123340 | |||| ||||| ||||| || | | || || | || | |||| ||||| || Sbjct 2162 GCTACCTAAATATCCACATACTCTTCTTATCACAGATACTTTTCTTGCATCATGATTACC 2221 Query 123341 ACACTTCGGACATTCGTATCCTTTAGAAGTAGCGGT-AAACTCACCGTTAAATCCACATT 123399 ||| | ||||| | || ||| || || | ||| || || ||| ||||||||| Sbjct 2222 ACAACTAGGACAAGAAAAACCCTTACTTGT-GCAATCAAATTCGCCTTTATATCCACATT 2280 Query 123400 CAAAACAAACATCAACTGGAGTGTTTGTTCCATAGTACGG---AGTGTTCCGATAAGCAT 123456 || |||| | |||| |||||| ||||||||||| || || | || |||| | Sbjct 2281 CATAACACTCGTCAATTGGAGTATTTGTTCCATAATAAGGCACAAATTT---ATAACTAA 2337 Query 123457 AATCCCAAACTGCTTCGAGTGCTTCCAGATTGTGTTTCATATTCGGATATTCACCGTATG 123516 |||||||||| |||| | ||||| | ||| | | ||||||| |||||||||||||| Sbjct 2338 AATCCCAAACATCTTCTAATGCTTTAATATTTTTTCTCATATTAGGATATTCACCGTAAC 2397 Query 123517 AAATGAAACCACCGGTACTAAG--CGGAATGAATTGCTTTTCAAAATCGATCTTGTCATA 123574 |||| || ||||| | || | | || || ||||||||| || || ||||| Sbjct 2398 AAATAAAGCCACCATTTGCAAATTCTGGAT--ATGATTTTTCAAAAAGAATTTTTTCATA 2455 Query 123575 CGGATTTG-TGTTCATATCCACAGACAGATGGAAGCTGTTTGTGTAATAGTCTTTATCA- 123632 |||||| || | | | ||| || ||||| || ||||| ||||| | || || Sbjct 2456 TGGATTTACTGATTTTTTA-ACATCCAAGTGGAAACTATTTGTATAATAATTCTTGTCTG 2514 Query 123633 -AACACCTTGTGCTCATAC-AGAGCGTGATCGATCTTA---GCGAAA-CGATAACACAGA 123686 |||||||| | | || | | | | | |||| | || ||| | || ||| ||| Sbjct 2515 TAACACCTT-TAATAATGCCAAATTCTTTTTTATCTAATTGGCAAAATCTATCACAAAGA 2573 Query 123687 CTTTCAGATGGAGTGCCATACAGACTAAACGCCAGTCCAGTTTCTGCTTTCCACGCAT-T 123745 ||||| ||| |||| ||| | |||||| | ||| ||||| |||||| || | Sbjct 2574 TTTTCACTTGGCGTGCTATATAAACTAAAACCATATCCTGTTTCATTTTTCCAGCTATCT 2633 Query 123746 A--GCCATTTCTTTCATGCGAGACAATACGTCCAGCAAGAATGCTTGTTTCTCGGCGTTT 123803 | ||| | |||| | |||||| | ||| ||| ||| ||| || | || Sbjct 2634 ACTGCC-TCTCTTAATTTTTTAACAATAAATAATCCAA-AATTCTT-TTTATCTTCATTG 2690 Query 123804 TC---CATAACGTGCGATTCATCGTTGAAC-TTG-ATGATCTCAGATACTTCATGCAATC 123858 || |||| | |||||| | ||| ||| || | || |||||| | || Sbjct 2691 TCAAACATATGTTCTGATTCACTATCAAACATTGCATTAACTG-----CTTCATTTATTC 2745 Query 123859 CAATATAGCC-AATGCTAACAGATGCGCGACCATTTTCAAATGCTTTCATGATGTCATCA 123917 | |||||||| |||| || ||||| | ||||||| ||| || || || ||||| Sbjct 2746 CTATATAGCCTAATGA-AATTGATGCTCTTCCATTTTTAAAAATTTCAATAATATCATCT 2804 Query 123918 TTTGGTTTCAGACGAACACCACAAGCACCTTCAACATAAAGAATCGGAGCAACGCTTGCC 123977 | ||| || || | | || |||||||||||| ||| | || || ||||| | || Sbjct 2805 TCTGGATTAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGGCAACCTTAGCT 2864 Query 123978 TTGACACCACGCAGACGATCAACGCGAGTCAACAAAGCTTTCTTAACGATTTCCATACGC 124037 || ||||| || | |||| | |||| || | ||| ||| | || | | | Sbjct 2865 TTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAATATTTAATCTT 2924 Query 124038 TCTTCCAGAATTTCAAAGAAGCGCATTTG-----ATTGCCGTTT---GCGTCGAGTGCGA 124089 | ||| | || | ||| | |||| ||| || | || || | ||| | Sbjct 2925 TTTTCTA--ATATAAAATTAA---ATTTTTCAAAATTACCACATCCTGCTTCAATTGCTA 2979 Query 124090 TACGCGGCAAGTTCAGAGTAACAACACCGAGATTGTTTCTGCCTTCATGAACTTCATTAC 124149 | | || | || | | |||| ||||| | ||| ||||| || || |||| ||||| Sbjct 2980 TTCTGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAATACTATTAC 3039 Query 124150 CGGTTTCGTCTTCCCAGCGATGCAAGAAACTACGGCATCCCATAGGGAACTTAAAGCTAC 124209 | |||| ||||| | | | ||| || | ||| ||||| || ||||||| || Sbjct 3040 CATTTTCATCTTCATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGTCTTAAAGGAAC 3099 Query 124210 CAGTCACTTCTACCA-CTTTATCATAACTCAAGATGTCTGGATACATACGCTTGGCAGCG 124268 |||| | ||| || ||| |||||| | || || || |||||||| || | | | Sbjct 3100 CAGTTG-TCCTAACAACTTGCTCATAATTTAAAATATCAGGATACATTCGTTGTGTTGAA 3158 Query 124269 CACTCCAGTGCCATCTGTTTGATACGATACAGAGGATCAGT-TGGTTTCAAGTTGTGTCC 124327 || || || |||| ||||| ||| ||| |||||| | | ||| | |||| || Sbjct 3159 CATTCAAGCGCCAGTTGTTTTATATCATAATTAGGATCGCTATTAATTCTATTTGTC-CC 3217 Query 124328 GTCTTTCAGCGCGAAAACAAGTTTCGGGAAAACGGGAGTAATACCTTCTTTGCCAAGACC 124387 ||||| | || ||||||||||| || || || | || | | ||| || | || Sbjct 3218 TTCTTTTATGGCAAAAACAAGTTTTGGAAATACTGCCGTTTTTTTATTTTTTCCTAACCC 3277 Query 124388 TTTCATCCGAACTTTCAGAATTGCTTCCTGAATGAGTTCGGATTCCCAGCTAGTGCCTAG 124447 || || | | | | |||| || ||||| | | || || | || || Sbjct 3278 ATTTATTCTGTTTCTTAATATTGATTTTTGAATTAATCTTTCCTCTTTTGTAATTCCAAG 3337 Query 124448 TCCAAACCCGAAAGTGCAGAATGGAGTTTGACCATTTGCCGAGTGCAGAGTGTTTACCTC 124507 |||||| || ||||| ||||| ||||| |||||||| | |||| ||| || | || Sbjct 3338 TCCAAAACCAAAAGTAACAAATGGGGTTTGTCCATTTGCGGTATGCAAAGTATTAATTTC 3397 Query 124508 ATACTCTAGGCTTTGCATTGCATCATACACGGCTTTGCGAGTCTTTTCAATAGCGTATTG 124567 ||| |||| | ||| | |||||| | |||| | | |||||| || | |||| Sbjct 3398 ATATTCTAATCCTTGAAAAGCATCAAAACATTCTTTTTCAATTTTTTCATTAACATATTT 3457 Query 124568 CCTTTGATCTGGAATTTTCCAATAACGCGCTTCATCCAAATGCTTTTCATGTGTCATCTT 124627 | ||| || || || | | | ||| | | |||| | | || Sbjct 3458 ATCTGGATTGGGGATATTATATTTTTCTGTTTCTTTAATTAACTTTATTTCAGAAGCTTT 3517 Query 124628 AACATAAGGTGCCAA--TGCT-TCGTCAATGCGATTAATTGTGTTGCCACCATAAATGTG 124684 |||||||| || || | | ||| | || ||||| || | ||||||||| | || Sbjct 3518 TACATAAGGGGCTAAAATAATATCGATATTG---TTAATCGTTGTTCCACCATAAGTATG 3574 Query 124685 ACTTGCAACCTGTGCAATGATTTGAGCAGTAACAGCCGCAGCGGTAGCGAT-GCTCTTAG 124743 |||||| || || || || ||||||||||| | ||||| || || | || | | | | Sbjct 3575 ACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGT-G 3633 Query 124744 GAGTTTCGATCTGTGCATTACCCATGCGGAACCCACGCTCTAACATGCCGTTGAGATCAA 124803 ||||||| || | ||||| || || || |||| || | ||| || || | ||||| Sbjct 3634 GAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCAA 3693 Query 124804 TCAACATGCAGTTAAACATTGGGAAGAACGGAGAGTAATCAAGATCATGGAAGTGAATAA 124863 ||||| || ||||||||||| || || || || ||||| | |||||| | ||||| Sbjct 3694 CTAACATACAATTAAACATTGGAAAAAATGGTGAATAATCTAAATCATGATAATGAATTT 3753 Query 124864 AACCAGCTTCGTGTGCTTGCAGAACTTCGGTCGGCAG-ATAGTGCTTT---GCAAAGTGC 124919 ||| ||| || || | | || || | || || ||| || ||| ||| | || Sbjct 3754 CACCTTTTTCATGAGCGTCAACTACGTCTTTGGGAAGTATA-TGATTTTTAGCATAATGT 3812 Query 124920 TTGCTTACTATGCCCGCGACTAAATCGCGTTGTGTCGGAATAACTTTTGCATCTTTGTTT 124979 || | ||| || || | ||||| | ||| || |||||||| || |||||| || Sbjct 3813 TTAGAAATTATACCAGCTAACAAATCTCTTTGAGTTGGAATAACATTGCTATCTTTATTA 3872 Query 124980 GCATTCTCATT 124990 ||||| ||||| Sbjct 3873 GCATTTTCATT 3883 >seq2305 Length=5865 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 191862 TGGTGCGCCGTGATGGACTCGAACCATCGACCCTCGGATTAAAAGTCCGATGCTCTACCA 191921 |||||| ||| |||| |||||||| ||||| || ||||||||||||| |||||||||| Sbjct 4123 TGGTGCATTGTGCTGGATTCGAACCAGCGACCTTCAGATTAAAAGTCCGTTGCTCTACCA 4064 Query 191922 ACTAAGCTAAC 191932 ||| ||||||| Sbjct 4063 ACTGAGCTAAC 4053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720449875833120