Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq1470 168 3e-36 seq13975 86.0 2e-11 >seq1470 Length=5781 Score = 168 bits (186), Expect = 3e-36 Identities = 444/670 (66%), Gaps = 31/670 (5%) Strand=Plus/Plus Query 450948 GTGTAGGTGTTTACCAAAATGGAAATGTAGAAATTATAGCAAATGACCAAGGATCACGAA 451007 |||| |||||||| | || ||| ||| |||||||| || || || ||||| || | Sbjct 2336 GTGTTGGTGTTTATAAGAACGGACGTGTTGAAATTATTGCCAACGATCAAGGTAACCGTA 2395 Query 451008 CTACTCCTTCATGGGTAAGTTTTACGGATTCAGAAAGACTTTTA---GGGCAAGCTGCTA 451064 ||||| |||| || |||| || | || || ||| || | || || | Sbjct 2396 TCACTCCCTCATATGTTGGTTTCACAAGTGAAGGTGAACGTTTGATTGGTGATGCCGCCA 2455 Query 451065 AATCAAT--GGTAAATTCAAATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGG 451122 || ||| | | | ||||| | | || ||||||| ||||| || ||||| ||||| Sbjct 2456 AA--AATCAGTTGACCACAAATCCAGAGAATACAGTATTCGATGCCAAGCGTTTGATTGG 2513 Query 451123 CCGTATGTATG--ATGATGATACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTA 451180 ||| | ||| |||||| | ||| ||| | || | |||||||| | | | || Sbjct 2514 TCGT--GAATGGAATGATGCCAATGTGCAACATGACATCAAATTCTTCCCCTTCAAAGTG 2571 Query 451181 GTAAATCAAAAAGGA----AAGCCCTATATTCAAGT---AAATTATAAAGGTGAAACTAA 451233 ||| ||||| | ||||| | |||||||| || || | | ||| || || Sbjct 2572 ----ATCGAAAAGAACTCCAAGCCACACATTCAAGTTCAAACTTCTCAGGGT---ACCAA 2624 Query 451234 AACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 | ||||| ||||||||||| || | |||||| | ||||||||| || || || || Sbjct 2625 AGTGTTTGCACCTGAAGAAATCTCCGCCATGGTTTTGGGTAAAATGAAGGACACCGCTGA 2684 Query 451294 ACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGA 451353 | || | || || || |||| || | || || ||||| || || || || Sbjct 2685 AGCCTACTTGGGCAAGAAGGTCACCAATGCTGTGGTCACAGTACCCGCCTACTTTAACGA 2744 Query 451354 TGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAAT 451413 ||| ||||| ||||| || ||||| || || |||||||||| | |||||| | || || Sbjct 2745 TGCTCAACGTCAAGCCACCAAAGACGCTGGCGTTATTGCTGGTCTTAATGTTATGCGTAT 2804 Query 451414 TATTAATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGA 451473 |||||||| || || || ||||| |||| || || | ||| || | || | Sbjct 2805 CATTAATGAGCCCACCGCTGCTGCCATAGCCTACGGTTT-GGACAAGAAGGAG-----GG 2858 Query 451474 AGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTC 451533 ||||| ||| | || ||||| ||||| ||||| || ||| |||| || | | | Sbjct 2859 TGAAAAGAATGTGTTGGTATTCGATTTGGGTGGTGGTACTTTTGATGTGTCACTCTTGAC 2918 Query 451534 AATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGA 451593 ||||| | || ||||| || || ||| ||||| |||||||||||| | || ||||| Sbjct 2919 CATTGACAACGGTGTATTCGAGGTGGTGGCCACCAACGGTGATACTCATTTGGGTGGTGA 2978 Query 451594 AGATATTGAT 451603 |||| | ||| Sbjct 2979 AGATTTCGAT 2988 >seq13975 Length=1469 Score = 86.0 bits (94), Expect = 2e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||||||||||||||| | |||||||| | || ||||| ||||| | ||| ||||||| Sbjct 1283 GCAATTGGAATTGATTTGGGAACCACATACTCCTGTGTTGGTGTCTTTCAACATGGAAAA 1342 Query 450974 GTAGAAATTATAGCAAATGACCAAGGA 451000 |||||||| || || || ||||||||| Sbjct 1343 GTAGAAATAATTGCCAACGACCAAGGA 1369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974932428967292