Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1470 185 7e-41 seq1985 165 6e-35 seq12187 98.7 8e-15 >seq1470 Length=5781 Score = 185 bits (204), Expect = 7e-41 Identities = 436/644 (68%), Gaps = 22/644 (3%) Strand=Plus/Minus Query 518020 ACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAA 518079 ||| | ||| ||||||||||| ||||| | ||||| || || || || | ||| Sbjct 2994 ACGTTGATCGAAATCTTCACCACCCAAATGAGTATCACCGTTGGTGGCCACCACCTCGAA 2935 Query 518080 AAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAAT 518139 | || | |||| | ||| || | |||||| || |||||||||| ||| || | Sbjct 2934 TACACCGTTGTCAATGGTCAAGAGTGACACATCAAAAGTACCACCACCCAAATCGAATAC 2875 Query 518140 AAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 | |||||| |||| || | | || || | ||| || || | |||||||| || Sbjct 2874 CAACACATTCTTTTCACCCTCCT---TCTTGTCCAAACCGTAGGCTATGGCAGCAGCGGT 2818 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 || |||||||| || | || |||||||||||||||||| || || ||||| ||||| Sbjct 2817 GGGCTCATTAATGATACGCATAACATTAAGACCAGCAATAACGCCAGCGTCTTTGGTGGC 2758 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA-CTTCTT 518318 ||| | ||| | ||||||||| || || || || || | || |||| || | |||||| Sbjct 2757 TTGACGTTGAGCATCGTTAAAGTAGGCGGGTACTGTGACCACAGCATTGGTGACCTTCTT 2698 Query 518319 TACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 518378 |||| || || || || | |||||||||| |||| ||| | || |||| || Sbjct 2697 GCCCAA-GTAGGCTTCAGCGGTGTCCTTCATTTTACCCAAAACCATGGCGGAGATTTCTT 2639 Query 518379 CTGGGGAATATTGCTTGGATTCATTTTGA--TATGATACTTCAAAATATGGTTT--ATTA 518434 | || | | | ||| | | | | || | ||| |||| || | ||| || | | Sbjct 2638 CAGGTGCA-AACACTTTGGTACCCTGAGAAGTTTGA-ACTTGAATGTGTGGCTTGGAGTT 2581 Query 518435 CCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG--TCAT 518492 | | || ||||| || || || |||| || || ||| ||| |||| |||| Sbjct 2580 C--TTTTCGATCACTTTGAAGGGGAAGAATTTGATGTCATGTTG--CACATTGGCATCAT 2525 Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CA 518551 | | || | |||||| || || || ||||| || | ||||| |||||| | | || Sbjct 2524 TCCATTCACGACCAATCAAACGCTTGGCATCGAATACTGTATTCTCTGGATTTGTGGTCA 2465 Query 518552 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTC---TGTAAATGAAACATAT 518608 | |||| |||||| ||||| ||||||| | |||| || ||| || ||||||| Sbjct 2464 AC-TGATTTTTGGCGGCATCACCAATCAAACGTTCACCTTCACTTGTGAAACCAACATAT 2406 Query 518609 GATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAAC 518652 || ||||| | || ||||||||||| || |||||||||||||| Sbjct 2405 GAGGGAGTGATACGGTTACCTTGATCGTTGGCAATAATTTCAAC 2362 >seq1985 Length=11301 Score = 165 bits (182), Expect = 6e-35 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235 |||| | |||| |||||||||||||||||||| |||||||| ||||||||||| || Sbjct 1683 ACCAAATGCAAGTGCAGCAGCAGTTGGTTCATTTATAATTCTTTGCACATTAAGACCTGC 1624 Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 |||| | || || ||||| || ||||| ||||| | |||||||||||| || |||||||| Sbjct 1623 AATTTTACCAGCGTCTTTTGTTGCTTGCCTTTGAGCATCGTTAAAATAAGCTGGAACAGT 1564 Query 518296 AATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACT 518355 ||||| || || || |||| | || | |||| | || | || |||||||||| | Sbjct 1563 TATAACAGCGTCTGTAACTTTCTCGCCTAAATAATCTTCCGCAGCTTTTTTCATTTTAAT 1504 Query 518356 TAAAATCATTGATGAAATTTGTTCTGGGGAA 518386 |||||| | |||||||||| ||||||| Sbjct 1503 TAAAATTTCAGCAGAAATTTGTTGTGGGGAA 1473 Score = 113 bits (124), Expect = 3e-19 Identities = 287/431 (67%), Gaps = 28/431 (6%) Strand=Plus/Minus Query 517218 TAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATAC 517277 |||||||||| || || | ||| |||||| ||||| ||| ||| | | ||||| Sbjct 2720 TAATAGTAATTTTATTTGCTTTATTTGTTTTCTTATCTTTGGCTTCAACACTGATAATAC 2661 Query 517278 CATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGA 517337 |||| || | ||||||||| |||||||||||||| ||||| ||||||| | Sbjct 2660 CATTCTGGTCAATATCAAATGTAACTTCAATTTGAGGTGTCCCTCGTGGAGCAGGGTCTA 2601 Query 517338 TCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCT 517397 | ||||| ||||||||| || | |||||||| || ||||| ||| || | Sbjct 2600 TACCTTCTAAATTAAATTCACCTAACAATTTATTATCAGAAGAACGTTTTCTTTCGCCTT 2541 Query 517398 CGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA---AATACT--CT 517452 ||| | || || ||| | |||||||||| || || ||| || ||| || Sbjct 2540 GGAATACTTTAATTCCTACTGAATTTTGATTATC---ATCAGCCGTAGAGAACACTTGCT 2484 Query 517453 GGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 ||||| || |||||||| || ||| || |||| | ||||| | |||||| Sbjct 2483 -GATTTCTT-GTTGGAATTGTCGTATTTTTAGGTATAAGAACAGTCATTACACCACCCAT 2426 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 517572 |||||| | ||||| ||| | ||| || ||||||| || | || || || | |||| Sbjct 2425 TGTTTCAATACCAATAGATAAAGGTGTTACATCAAGAAGAAGAAGATCTT---TTGTTTC 2369 Query 517573 ATCAGTTTGACCAACAAGAATAGCTG---CTTGAATAGCAGCACCATATGCAACAGCTTC 517629 | | ||| |||| ||| |||| || || ||||| ||| || ||||| Sbjct 2368 ACCTGTT-----------AATA-CTGAACCTTGTATTGCTGCACCTAATGACACTGCTTC 2321 Query 517630 ATCAGGATTAA 517640 ||||||||||| Sbjct 2320 ATCAGGATTAA 2310 Score = 93.3 bits (102), Expect = 3e-13 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 322248 ATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCAATTT 322307 ||||||| || || |||||||||||||| || ||| | | |||| | ||| ||||||| Sbjct 1678 ATGCAAGTGCAGCAGCAGTTGGTTCATTTATAATTCTTTGCACATTAAGACCTGCAATTT 1619 Query 322308 TAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTAATAA 322367 || ||| || |||||||| || || || || |||||||| ||||| ||||| |||| Sbjct 1618 TACCAGCGTCTTTTGTTGCTTGCCTTTGAGCATCGTTAAAATAAGCTGGAACAGTTATAA 1559 Query 322368 CTGC 322371 | || Sbjct 1558 CAGC 1555 >seq12187 Length=3570 Score = 98.7 bits (108), Expect = 8e-15 Identities = 159/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 397472 TACATTTCTCCATGAGCATTTTCCATTGCATATTGGAAACCATAAGCACATTCAGCTTCT 397531 |||||||| || |||||||||| ||| ||||||||||||| ||| || || Sbjct 1257 TACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCA 1198 Query 397532 TTTATTTTCACAACATCAATAAGATTTTCTTTAATATTAGCATTAACAATACCATCAGCT 397591 |||||| || | | | | | ||| | ||| |||| ||||| ||||||| Sbjct 1197 GTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAG 1138 Query 397592 GCCGCAAAAAATGCCAATACGTGCATAATAAAATTTCTATCATCATCGCTCAAATGATTA 397651 || || ||||||||||| || ||| ||||||| || |||| ||| |||| || Sbjct 1137 GCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAA---TTTT 1081 Query 397652 TTCCAATCATTCACATCTTTTGCCAAATCCACTTCTTCAACTGTCCAA 397699 | ||| ||||||| ||| || ||||||||||| || ||||||||| Sbjct 1080 TCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAA 1033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779281646344594