Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_014663.1 Length=169947 Score E Sequences producing significant alignments: (Bits) Value seq4032 107 2e-18 seq2305 82.4 8e-11 >seq4032 Length=2654 Score = 107 bits (118), Expect = 2e-18 Identities = 135/181 (75%), Gaps = 7/181 (4%) Strand=Plus/Minus Query 79679 TTAAATGGAGATAGAGGTGGGATTTGAACCCACGGACCCATTTTGCAATGGATCGCCGGT 79738 || ||||||| || | |||||| |||||| ||||| ||||| | ||| | ||| || Sbjct 1745 TTTAATGGAGGAAGTGAAGGGATTCGAACCCTTGGACC-ATTTTTCGATG-ACCGCTTGT 1688 Query 79739 TTTCAAGACCGGAGCAATAAGCCAGACTCTGCCACTCTACCATTAAATT----GGCTCCC 79794 ||||||||| | ||||||||||| |||||||||| || |||||| ||| ||| || Sbjct 1687 TTTCAAGACAAGTGCAATAAGCCA-ACTCTGCCACACTTCCATTATATTATTTGGCGACC 1629 Query 79795 CGACCACGGTTCGAACGTGGGACAAACAGAGTAACAGTCTGCTGCTCTACCAACTGAGCT 79854 | || | |||||| || |||| | || |||||||| | | |||||||||||| || Sbjct 1628 CATGCAAGACTCGAACTTGCGACATATGGATTAACAGTCCACCGTTCTACCAACTGAACT 1569 Query 79855 A 79855 | Sbjct 1568 A 1568 Score = 102 bits (112), Expect = 9e-17 Identities = 173/243 (71%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 79617 GGATTCGAACCAGCGACCTGCGGATTATCGGTCCGTTGCTCTACCAACTGAGCTATTCGA 79676 ||| | ||||| | ||| | ||||| | ||| |||||||| | ||||||| | || Sbjct 1539 GGACTTGAACCTACAACCATCCGATTAACAGTCGTGCGCTCTACCGATTGAGCTAAT-GA 1481 Query 79677 CGTTAAATGGAGATAGAGGTGGGATTTGAACCCACGGACCCATTTTGCAATGGATCGCCG 79736 || ||||| || | ||||||||||||| | || ||||| ||||| | | | Sbjct 1480 -GTC---TGGAGGAAGTGAAGGGATTTGAACCCTTGTGCC-ATTTTCCAATG-ACAGTCT 1427 Query 79737 GTTTTCAAGACCGGAGCAATAAGCCAGACTCTGCCACTCTACCATTAAATT----GGCTC 79792 | |||||| || || ||||||||||| |||||||||| || |||||| ||| ||| Sbjct 1426 GCTTTCAAAACAGGTGCAATAAGCCA-ACTCTGCCACACTTCCATTATATTATTTGGCGA 1368 Query 79793 CCCGACCACGGTTCGAACGTGGGACAAACAGAGTAACAGTCTGCTGCTCTACCAACTGAG 79852 ||| || | |||||| || |||| | || |||||||| | | |||||||||||| Sbjct 1367 CCCATGCAAGACTCGAACTTGCGACATATGGATTAACAGTCCACCGTTCTACCAACTGAA 1308 Query 79853 CTA 79855 ||| Sbjct 1307 CTA 1305 >seq2305 Length=5865 Score = 82.4 bits (90), Expect = 8e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 79614 GCTGGATTCGAACCAGCGACCTGCGGATTATCGGTCCGTTGCTCTACCAACTGAGCTA 79671 |||||||||||||||||||||| | ||||| ||||||||||||||||||||||||| Sbjct 4112 GCTGGATTCGAACCAGCGACCTTCAGATTAAAAGTCCGTTGCTCTACCAACTGAGCTA 4055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543491382302280