Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq1470 259 6e-64
seq1845 109 7e-19
seq24243 104 3e-17
seq13975 98.7 1e-15
>seq1470
Length=5781
Score = 259 bits (286), Expect = 6e-64
Identities = 786/1202 (65%), Gaps = 37/1202 (3%)
Strand=Plus/Minus
Query 6640 ATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATT 6699
||| || |||||| ||||||||| ||||| | | |||| |||||||| || || |
Sbjct 3798 ATCGTTGGTAATCACAATCTTTTCCTTGTTACCAGTGCCCTTGTCTTCAGCGCTCACTTG 3739
Query 6700 CAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGC 6759
||||||||| || ||||| | || || ||| | ||||||||| |||| | |||||
Sbjct 3738 CAAAATACCGTTAGCATCGATCTCAAAGGATACCTCAATTTGTGGAATACCACGTGGTGC 3679
Query 6760 GGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACG 6819
| |||||| || || ||||||||| |||| | || |||||| | | | | |||
Sbjct 3678 TGGTGGAATGCCAGTCAAATCAAATTTACCCAACAAGTGGTTATCTTTGGTCATTGGACG 3619
Query 6820 TTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGAT 6879
|||||||||||| |||| ||| || || | | ||| | || || || ||||| ||
Sbjct 3618 TTCACCTTCATATACTTGAATGGTGACAGTTGTTTGCTGGTCAGAGGCAGTAGAGAAAAT 3559
Query 6880 TTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACC 6939
|||| |||||||| ||||| || || | ||||| | |||||| | ||||||
Sbjct 3558 TTGTGATTTCTTAGTGGGAATAACAGTGTTACGTGGAATCAATTTGGTCATCACACCACC 3499
Query 6940 CATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGA 6999
|| |||||| | || | || || || | || ||||| | | | | | | |||
Sbjct 3498 CACAGTTTCAATACCCATAGTCAATGGGTTGACATCCAACAAGACAATGGCAT---CAGT 3442
Query 7000 TTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTC 7059
|| | |||||| | || | | ||||| || | || || || || || || ||
Sbjct 3441 ATCCTG---TTCACCAGACAATACACCAGCTTGTACAGCGGCACCATAGGCCACAGCTTC 3385
Query 7060 ATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAAC-ATTTGTT 7118
||| ||||| || | |||| || || | ||| ||| | |||| | |||||
Sbjct 3384 ATCAGGGTTGATACCACGAGATGGTTCCTTGCC-TCCAAAGAATTCCTTAACCAATTGTT 3326
Query 7119 GAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTAT 7178
| | ||| || || ||||| || ||||| |||| || ||||| | || | | |||
Sbjct 3325 GTACTTTGGGAATACGTGTTGAACCACCAACCAGCACAATTTCGTGTACATCCTTTTTGC 3266
Query 7179 CGATCTTTGAGTCT-CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCC 7237
|| | | ||| | ||| ||||| | ||||||| || | |||||||||||||
Sbjct 3265 TCATGTCAGCATCTTCCAAGACTTTTTGC-ACAGGTTTCAAAGTGGAACGGAACAAGTCC 3207
Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297
|| || ||| ||||| ||||| || | || | | || ||| | || || |
Sbjct 3206 ATGTTCAATTCTTCAAATTTGGCACGTGTCAAGGTTTCAGCAAAGTCATCACCTTCAAAG 3147
Query 7298 AACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357
|| || || ||||||||| ||| | ||| || | ||||| || ||||
Sbjct 3146 AATGATTCGATTTCAATGCGCACTTGATGAGCACCAGACAAGGCACGCTTGGCTTTCTCA 3087
Query 7358 CACGCCGTTCGTAAACGACGAA------GGGCA-CGCGGGTTACC--GGAAATATCTTT- 7407
|| ||| |||||| | | || | ||| | || | |||||| ||
Sbjct 3086 -AC----TTC----ACGACGCAATTTCTGTACAGCACGGTTGTCCTTGCGAATATCCTTG 3036
Query 7408 --CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCT 7465
||| | || || || || | ||| || | || | ||||||||||
Sbjct 3035 CCCTTCTTCTTC---TTGTACAATTTAATGAAATGATCCATGACACGTTGATCGAAATCT 2979
Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525
||||||||||| || ||||| || ||| || || || || | ||| ||||||
Sbjct 2978 TCACCACCCAAATGAGTATCACCGTTGGTGGCCACCACCTCGAATACACCGTTGTCAATG 2919
Query 7526 TTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG 7585
| || | || |||||||| ||||||||||||| || || | | || ||| | ||
Sbjct 2918 GTCAAGAGTGACACATCAAAAGTACCACCACCCAAATCGAATACCAACACATTCTTTTCA 2859
Query 7586 TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATA 7645
| || || ||| || | |||||| || || || || || || || |||||||| |||
Sbjct 2858 CCCTCCTT---CTTGTCCAAACCGTAGGCTATGGCAGCAGCGGTGGGCTCATTAATGATA 2802
Query 7646 CGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCG 7705
|| | | || || ||||||||| | || ||||| || ||||| ||||| | ||||
Sbjct 2801 CGCATAACATTAAGACCAGCAATAACGCCAGCGTCTTTGGTGGCTTGACGTTGAGCATCG 2742
Query 7706 TTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCC 7765
||||||||||| || || || || || || | ||||| ||||| || | || | |||
Sbjct 2741 TTAAAGTAGGCGGGTACTGTGACCACAGCATTGGTGACCTTCTTGCCCAAGTAGGCTTCA 2682
Query 7766 GCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTC 7825
||| | || |||||||| | |||||| | || || ||||||| |||||| |||
Sbjct 2681 GCGGTGTCCTTCATTTTACCCAAAACCATGGCGGAGATTTCTTCAGGTGCAAACACTTTG 2622
Query 7826 GT 7827
||
Sbjct 2621 GT 2620
>seq1845
Length=2059
Score = 109 bits (120), Expect = 7e-19
Identities = 155/213 (73%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 183307 CAATTTTGTAAATATATACCTGGTT-TGACTCGCGTCTTTACCACCCATGAGACGTGTAC 183365
||||||||| || ||||| | | || || || ||||||||||| | | |||||| |
Sbjct 1703 CAATTTTGTGAAAATATAACGCGCACTGGCT-GCATCTTTACCACCAGTTAAACGTGTGC 1645
Query 183366 CAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTAAAATTATGTGCTA 183425
|||||||||||| ||| || | | |||||||||||| || || ||| || ||||| |
Sbjct 1644 CAAATTGACCACGTGGCTCCAACAGATTAATATTATTGGAGCCTACAAAGTTCTGTGCCA 1585
Query 183426 ATTTTACAATTGT-ATCTGCCAAAGAGACTTCACCGTGGTGATACGATGTTTTTTCCGAA 183484
| || ||||| || || || || || ||||||||||| ||||| | | ||||| |
Sbjct 1584 AATTAACAATAGTCATTTGT-AAGGACACTTCACCGTGATGATAGGCAGACTTTTCAGCC 1526
Query 183485 ACGTATGCGGCTAATTGCGCAACCTTCATTTCA 183517
|| | | | ||||| || ||||||| ||||
Sbjct 1525 ACCGAACCAGACAATTGTGCCACCTTCACTTCA 1493
>seq24243
Length=2007
Score = 104 bits (114), Expect = 3e-17
Identities = 154/213 (72%), Gaps = 4/213 (2%)
Strand=Plus/Minus
Query 183307 CAATTTTGTAAATATATACCTGGTT-TGACTCGCGTCTTTACCACCCATGAGACGTGTAC 183365
||||||||| || ||||| | | || || || ||||||||||| | | |||||| |
Sbjct 1406 CAATTTTGTGAAAATATAACGCGCACTGGCT-GCATCTTTACCACCAGTTAAACGTGTGC 1348
Query 183366 CAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTAAAATTATGTGCTA 183425
|||||||||||| ||| || | | |||||||||||| || || ||| || ||||| |
Sbjct 1347 CAAATTGACCACGTGGCTCCAACAGATTAATATTATTGGAGCCTACAAAGTTCTGTGCCA 1288
Query 183426 ATTTTACAATTGT-ATCTGCCAAAGAGACTTCACCGTGGTGATACGATGTTTTTTCCGAA 183484
| || ||||| || || || || || ||||||||||| ||||| | | ||||| |
Sbjct 1287 AATTAACAATAGTCATTTGT-AAGGACACTTCACCGTGATGATAGGCGGACTTTTCAGCC 1229
Query 183485 ACGTATGCGGCTAATTGCGCAACCTTCATTTCA 183517
|| | | | ||||| || || |||| ||||
Sbjct 1228 ACCGAACCAGACAATTGTGCCACTTTCACTTCA 1196
>seq13975
Length=1469
Score = 98.7 bits (108), Expect = 1e-15
Identities = 148/208 (71%), Gaps = 7/208 (3%)
Strand=Plus/Minus
Query 7961 ACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCA 8020
|||| ||||||||| |||||||| ||| || || || || || || || | ||| ||
Sbjct 1467 ACTGAGTTTTTGGGATTCATGGCGACTTGATTTTTGGCGGCATCACCAATCAAACGCTCT 1408
Query 8021 TTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATA 8080
|| | || || || || || || || || ||||| ||||||||||| |||||
Sbjct 1407 GAATCT---GTGAATGCCACATAACTGGGTGTTGTACGATTTCCTTGGTCGTTGGCAATT 1351
Query 8081 ATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATA 8140
|||||||| | | ||| |||| || || || || || || ||||| ||||||||
Sbjct 1350 ATTTCTACTTTTCCATGTTGAAAGACACCAACACAGGAGTATGTGGTTCCCAAATCAATT 1291
Query 8141 CCGATTGCTTGAGTCA-TTTTATATATT 8167
|| ||||| || || |||||||||||
Sbjct 1290 CCAATTGC---AGGCATTTTTATATATT 1266
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 634886297021160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |