Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1470 259 6e-64 seq1845 109 7e-19 seq24243 104 3e-17 seq13975 98.7 1e-15 >seq1470 Length=5781 Score = 259 bits (286), Expect = 6e-64 Identities = 786/1202 (65%), Gaps = 37/1202 (3%) Strand=Plus/Minus Query 6640 ATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATT 6699 ||| || |||||| ||||||||| ||||| | | |||| |||||||| || || | Sbjct 3798 ATCGTTGGTAATCACAATCTTTTCCTTGTTACCAGTGCCCTTGTCTTCAGCGCTCACTTG 3739 Query 6700 CAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGC 6759 ||||||||| || ||||| | || || ||| | ||||||||| |||| | ||||| Sbjct 3738 CAAAATACCGTTAGCATCGATCTCAAAGGATACCTCAATTTGTGGAATACCACGTGGTGC 3679 Query 6760 GGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACG 6819 | |||||| || || ||||||||| |||| | || |||||| | | | | ||| Sbjct 3678 TGGTGGAATGCCAGTCAAATCAAATTTACCCAACAAGTGGTTATCTTTGGTCATTGGACG 3619 Query 6820 TTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGAT 6879 |||||||||||| |||| ||| || || | | ||| | || || || ||||| || Sbjct 3618 TTCACCTTCATATACTTGAATGGTGACAGTTGTTTGCTGGTCAGAGGCAGTAGAGAAAAT 3559 Query 6880 TTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACC 6939 |||| |||||||| ||||| || || | ||||| | |||||| | |||||| Sbjct 3558 TTGTGATTTCTTAGTGGGAATAACAGTGTTACGTGGAATCAATTTGGTCATCACACCACC 3499 Query 6940 CATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGA 6999 || |||||| | || | || || || | || ||||| | | | | | | ||| Sbjct 3498 CACAGTTTCAATACCCATAGTCAATGGGTTGACATCCAACAAGACAATGGCAT---CAGT 3442 Query 7000 TTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTC 7059 || | |||||| | || | | ||||| || | || || || || || || || Sbjct 3441 ATCCTG---TTCACCAGACAATACACCAGCTTGTACAGCGGCACCATAGGCCACAGCTTC 3385 Query 7060 ATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAAC-ATTTGTT 7118 ||| ||||| || | |||| || || | ||| ||| | |||| | ||||| Sbjct 3384 ATCAGGGTTGATACCACGAGATGGTTCCTTGCC-TCCAAAGAATTCCTTAACCAATTGTT 3326 Query 7119 GAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTAT 7178 | | ||| || || ||||| || ||||| |||| || ||||| | || | | ||| Sbjct 3325 GTACTTTGGGAATACGTGTTGAACCACCAACCAGCACAATTTCGTGTACATCCTTTTTGC 3266 Query 7179 CGATCTTTGAGTCT-CGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCC 7237 || | | ||| | ||| ||||| | ||||||| || | ||||||||||||| Sbjct 3265 TCATGTCAGCATCTTCCAAGACTTTTTGC-ACAGGTTTCAAAGTGGAACGGAACAAGTCC 3207 Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297 || || ||| ||||| ||||| || | || | | || ||| | || || | Sbjct 3206 ATGTTCAATTCTTCAAATTTGGCACGTGTCAAGGTTTCAGCAAAGTCATCACCTTCAAAG 3147 Query 7298 AACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCA 7357 || || || ||||||||| ||| | ||| || | ||||| || |||| Sbjct 3146 AATGATTCGATTTCAATGCGCACTTGATGAGCACCAGACAAGGCACGCTTGGCTTTCTCA 3087 Query 7358 CACGCCGTTCGTAAACGACGAA------GGGCA-CGCGGGTTACC--GGAAATATCTTT- 7407 || ||| |||||| | | || | ||| | || | |||||| || Sbjct 3086 -AC----TTC----ACGACGCAATTTCTGTACAGCACGGTTGTCCTTGCGAATATCCTTG 3036 Query 7408 --CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCT 7465 ||| | || || || || | ||| || | || | |||||||||| Sbjct 3035 CCCTTCTTCTTC---TTGTACAATTTAATGAAATGATCCATGACACGTTGATCGAAATCT 2979 Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525 ||||||||||| || ||||| || ||| || || || || | ||| |||||| Sbjct 2978 TCACCACCCAAATGAGTATCACCGTTGGTGGCCACCACCTCGAATACACCGTTGTCAATG 2919 Query 7526 TTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG 7585 | || | || |||||||| ||||||||||||| || || | | || ||| | || Sbjct 2918 GTCAAGAGTGACACATCAAAAGTACCACCACCCAAATCGAATACCAACACATTCTTTTCA 2859 Query 7586 TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATA 7645 | || || ||| || | |||||| || || || || || || || |||||||| ||| Sbjct 2858 CCCTCCTT---CTTGTCCAAACCGTAGGCTATGGCAGCAGCGGTGGGCTCATTAATGATA 2802 Query 7646 CGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCG 7705 || | | || || ||||||||| | || ||||| || ||||| ||||| | |||| Sbjct 2801 CGCATAACATTAAGACCAGCAATAACGCCAGCGTCTTTGGTGGCTTGACGTTGAGCATCG 2742 Query 7706 TTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCC 7765 ||||||||||| || || || || || || | ||||| ||||| || | || | ||| Sbjct 2741 TTAAAGTAGGCGGGTACTGTGACCACAGCATTGGTGACCTTCTTGCCCAAGTAGGCTTCA 2682 Query 7766 GCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTC 7825 ||| | || |||||||| | |||||| | || || ||||||| |||||| ||| Sbjct 2681 GCGGTGTCCTTCATTTTACCCAAAACCATGGCGGAGATTTCTTCAGGTGCAAACACTTTG 2622 Query 7826 GT 7827 || Sbjct 2621 GT 2620 >seq1845 Length=2059 Score = 109 bits (120), Expect = 7e-19 Identities = 155/213 (73%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 183307 CAATTTTGTAAATATATACCTGGTT-TGACTCGCGTCTTTACCACCCATGAGACGTGTAC 183365 ||||||||| || ||||| | | || || || ||||||||||| | | |||||| | Sbjct 1703 CAATTTTGTGAAAATATAACGCGCACTGGCT-GCATCTTTACCACCAGTTAAACGTGTGC 1645 Query 183366 CAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTAAAATTATGTGCTA 183425 |||||||||||| ||| || | | |||||||||||| || || ||| || ||||| | Sbjct 1644 CAAATTGACCACGTGGCTCCAACAGATTAATATTATTGGAGCCTACAAAGTTCTGTGCCA 1585 Query 183426 ATTTTACAATTGT-ATCTGCCAAAGAGACTTCACCGTGGTGATACGATGTTTTTTCCGAA 183484 | || ||||| || || || || || ||||||||||| ||||| | | ||||| | Sbjct 1584 AATTAACAATAGTCATTTGT-AAGGACACTTCACCGTGATGATAGGCAGACTTTTCAGCC 1526 Query 183485 ACGTATGCGGCTAATTGCGCAACCTTCATTTCA 183517 || | | | ||||| || ||||||| |||| Sbjct 1525 ACCGAACCAGACAATTGTGCCACCTTCACTTCA 1493 >seq24243 Length=2007 Score = 104 bits (114), Expect = 3e-17 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 183307 CAATTTTGTAAATATATACCTGGTT-TGACTCGCGTCTTTACCACCCATGAGACGTGTAC 183365 ||||||||| || ||||| | | || || || ||||||||||| | | |||||| | Sbjct 1406 CAATTTTGTGAAAATATAACGCGCACTGGCT-GCATCTTTACCACCAGTTAAACGTGTGC 1348 Query 183366 CAAATTGACCACATGGTTCGAGTAAATTAATATTATTCGACCCCGTAAAATTATGTGCTA 183425 |||||||||||| ||| || | | |||||||||||| || || ||| || ||||| | Sbjct 1347 CAAATTGACCACGTGGCTCCAACAGATTAATATTATTGGAGCCTACAAAGTTCTGTGCCA 1288 Query 183426 ATTTTACAATTGT-ATCTGCCAAAGAGACTTCACCGTGGTGATACGATGTTTTTTCCGAA 183484 | || ||||| || || || || || ||||||||||| ||||| | | ||||| | Sbjct 1287 AATTAACAATAGTCATTTGT-AAGGACACTTCACCGTGATGATAGGCGGACTTTTCAGCC 1229 Query 183485 ACGTATGCGGCTAATTGCGCAACCTTCATTTCA 183517 || | | | ||||| || || |||| |||| Sbjct 1228 ACCGAACCAGACAATTGTGCCACTTTCACTTCA 1196 >seq13975 Length=1469 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/208 (71%), Gaps = 7/208 (3%) Strand=Plus/Minus Query 7961 ACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCA 8020 |||| ||||||||| |||||||| ||| || || || || || || || | ||| || Sbjct 1467 ACTGAGTTTTTGGGATTCATGGCGACTTGATTTTTGGCGGCATCACCAATCAAACGCTCT 1408 Query 8021 TTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATA 8080 || | || || || || || || || || ||||| ||||||||||| ||||| Sbjct 1407 GAATCT---GTGAATGCCACATAACTGGGTGTTGTACGATTTCCTTGGTCGTTGGCAATT 1351 Query 8081 ATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATA 8140 |||||||| | | ||| |||| || || || || || || ||||| |||||||| Sbjct 1350 ATTTCTACTTTTCCATGTTGAAAGACACCAACACAGGAGTATGTGGTTCCCAAATCAATT 1291 Query 8141 CCGATTGCTTGAGTCA-TTTTATATATT 8167 || ||||| || || ||||||||||| Sbjct 1290 CCAATTGC---AGGCATTTTTATATATT 1266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634886297021160