Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq4853 167 3e-36
seq2021 132 6e-26
seq12187 96.9 4e-15
>seq4853
Length=2014
Score = 167 bits (184), Expect = 3e-36
Identities = 584/892 (65%), Gaps = 36/892 (4%)
Strand=Plus/Minus
Query 112082 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140
|||| || ||| | |||| ||||| ||||| || || | |||||||| | || ||||
Sbjct 873 GTGCACGAGATTTATTCTATGCTCTGTGGATACCCGACTTGTTCATGAAACGTGTGGAGG 814
Query 112141 -AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199
||| |||| ||||||| ||| | || ||| ||||| ||||| || || | |
Sbjct 813 CAGA-TGGCGATTGGTCACTCATGTGCCCACACAAGTGCCCCGGACTACATGAAGTTTGG 755
Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259
||||| || || || || || || || ||| ||| |||| || | | ||
Sbjct 754 GGTGAAGAATTCGAGCAACTTTATGAGAAATATGAGCGTGAAGGTCGTGCCAATCGCACT 695
Query 112260 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319
|| |||| ||||| || ||| | || ||||| || ||||| || |||
Sbjct 694 GTTAAAGCTCAAACCTTGTGGTTTGCCATTATAGAGGCTCAAGTGGAAACTGGCACTCCA 635
Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379
|||||||| || || || || ||||| | |||||||||||| ||||| | || |||
Sbjct 634 TATATGCTCTATAAGGATGCTTGTAATCGCAAGAGTAATCAACAGAATCTAGGCACTATC 575
Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439
||| | ||| | || || ||||| | |||| | | | ||||| | |||||
Sbjct 574 AAGTGCAGCAATTTATGCACTGAAATTGTAGAATATTCGGCACCGGATGAAATTGCTGTT 515
Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 112499
||||| | || ||||| || ||| | || ||| | ||||| ||||| | ||||
Sbjct 514 TGTAATTTAGCCTCAATTGCACTCAATATGTTTGTCAACCCAGA---CAAGACTTATGAT 458
Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559
| | |||||||| | |||||| | |||| ||| ||| || | |||| | | || ||
Sbjct 457 TTTAAAAAACTCAAAGAAGTTGCTAAAATTGTAACACGTAATTTGAACAAAATCATAGAC 398
Query 112560 AGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616
| |||| ||||| | ||| | ||| || |||||| | || ||||| ||
Sbjct 397 ATCAATTACTACCCGCTGCCGGAGGCCAAGCGT---TCAAATATGCGTCATCGTCCCATA 341
Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 112676
||| | || || ||||| |||| |||| ||| || || || | ||| |||
Sbjct 340 GGTATTGGAGTACAAGGATTCGCAGATGCATTGATACTCATGCGTTATCCATATGAAAGT 281
Query 112677 GACGAAGC---GAAG-GAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732
|| ||||| ||| ||||||| | |||||||| || || ||| | | || |
Sbjct 280 GAGGAAGCATTTAAGCTAAATCAA----CAAATATTTGAAACGATTTATTATGGTGCCTT 225
Query 112733 TGAGGCGAGTTCGGAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790
|| || || | |||||||| ||| | || ||||| |||||||| | || ||| ||
Sbjct 224 GGAAGCCAGCTGTGAGTTGGCTGAGAAGCTG--GGTCCCTATGAAACTTATGCGGGCTCA 167
Query 112791 CCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT 112848
|| | ||| |||||| | | || | |||||||||| || | ||| | || ||
Sbjct 166 CCTG--TCAGCAAGGGAATTTTACAGTATGATATGTGGCAA-AAAACACCTA-CTGATCT 111
Query 112849 ACG--ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT- 112905
| | | |||| | || ||||| || | | || | |||| | |||||
Sbjct 110 ATGGAATTGGGCGGAGCTGAAGGAGAAAATTGCTAAACATGGCGTGCGTA--ATTCTTTG 53
Query 112906 -TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATG 112956
| || ||||||||||| ||||||||||| ||||||||| |||| |||||||
Sbjct 52 CTCATTGCACCAATGCCTACAGCCTCCACTGCACAAATCATGGGCAATAATG 1
>seq2021
Length=2943
Score = 132 bits (146), Expect = 6e-26
Identities = 467/719 (65%), Gaps = 24/719 (3%)
Strand=Plus/Plus
Query 112082 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140
|||| || ||| | || | ||||| ||||| || || | |||||||| | || ||||
Sbjct 839 GTGCACGAGATTTATTTTATGCTCTATGGATACCCGACTTATTCATGAAACGTGTGGAGG 898
Query 112141 -AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199
||| |||| ||||||| ||| | || ||| ||||| ||||| || || | |
Sbjct 899 CAGA-TGGCGATTGGTCACTCATGTGCCCACACAAGTGCCCCGGACTACATGAAGTTTGG 957
Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259
||||| || || || || || || || ||| ||| |||| || | | ||
Sbjct 958 GGTGAAGAATTCGAGCAACTTTATGAGAAATATGAGCGTGAAGGTCGTGCCAATCGCACT 1017
Query 112260 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319
|| |||| ||||| || ||| | || |||| || ||||| || |||
Sbjct 1018 GTTAAAGCTCAAACCTTGTGGTTTGCCATTATAGAGGCTCAGGTGGAAACTGGCACTCCA 1077
Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379
|||||||| || || || || ||||| | |||||||||||| ||||| | || |||
Sbjct 1078 TATATGCTCTATAAGGATGCTTGTAATCGCAAGAGTAATCAACAGAATCTAGGCACTATC 1137
Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439
||| | ||| | || || ||||| | |||| | | | ||||| | |||||
Sbjct 1138 AAGTGCAGCAATTTATGCACTGAAATTGTAGAATATTCGGCACCGGATGAAATTGCTGTT 1197
Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 112499
||||| | || ||||| || ||| | || ||| | ||||| ||||| | ||||
Sbjct 1198 TGTAATTTAGCCTCAATTGCACTCAATATGTTTGTCAACCCAGA---CAAGACTTATGAT 1254
Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559
| | |||||||| | |||||| | |||| ||| ||| || | |||| | | || ||
Sbjct 1255 TTTAAAAAACTCAAAGAAGTTGCTAAAATTGTAACACGTAATTTGAACAAAATCATAGAC 1314
Query 112560 AGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616
| |||| ||||| | ||| | ||| || |||||| | || ||||| ||
Sbjct 1315 ATCAATTACTACCCGCTGCCGGAGGCCAAGCGT---TCAAATATGCGTCATCGTCCCATA 1371
Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 112676
||| | || || ||||| |||| |||| ||| || || || | ||| |||
Sbjct 1372 GGTATTGGCGTACAAGGATTCGCAGATGCATTAATACTCATGCGTTATCCATATGAAAGT 1431
Query 112677 GACGAAGC---GAAG-GAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732
|| ||||| ||| ||||||| | |||||||| || || ||| | | || |
Sbjct 1432 GAGGAAGCATTTAAGCTAAATCAA----CAAATATTTGAAACGATTTATTATGGTGCCTT 1487
Query 112733 TGAGGCGAGTTCGGAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 112789
|| || || | |||||||| ||| | || ||||| |||||||| | || ||| ||
Sbjct 1488 GGAAGCCAGCTGTGAGTTGGCTGAGAAGCTG--GGTCCCTATGAAACTTATGCGGGCTC 1544
>seq12187
Length=3570
Score = 96.9 bits (106), Expect = 4e-15
Identities = 158/225 (70%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149
|| ||| | ||||| |||| | || | || | ||||| || |||||||| |||
Sbjct 1307 CTATTTAACGCCATTGAAACGCTGCCTGCTGTTAAGAAGAAGGCTGATTGGGCCATGGCC 1366
Query 102150 TGGTT-TGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 102208
||| | | || ||| ||| |||| |||||| | | |||||||| ||||||
Sbjct 1367 TGGATCTCATCGAAA-TCGGCCAATTTTGGTGAGCGTATTATAGCATTTGCAGCTGTTGA 1425
Query 102209 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 102268
|||||| |||||| ||| ||| | |||||| ||||| ||||| || ||||||||
Sbjct 1426 GGGTATTTTCTTCAGTGGCAGTTTCGCCTCTATTTTCTGGCTTAAGAAACGTGGTCTCAT 1485
Query 102269 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313
||| || || |||||||| ||||| || || |||||||| ||
Sbjct 1486 GCCTGGCCTGACATTCTCCAATGAGCTGATTTCACGTGACGAAGG 1530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620501482115280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |