Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq4853 167 3e-36 seq2021 132 6e-26 seq12187 96.9 4e-15 >seq4853 Length=2014 Score = 167 bits (184), Expect = 3e-36 Identities = 584/892 (65%), Gaps = 36/892 (4%) Strand=Plus/Minus Query 112082 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 |||| || ||| | |||| ||||| ||||| || || | |||||||| | || |||| Sbjct 873 GTGCACGAGATTTATTCTATGCTCTGTGGATACCCGACTTGTTCATGAAACGTGTGGAGG 814 Query 112141 -AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| |||| ||||||| ||| | || ||| ||||| ||||| || || | | Sbjct 813 CAGA-TGGCGATTGGTCACTCATGTGCCCACACAAGTGCCCCGGACTACATGAAGTTTGG 755 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259 ||||| || || || || || || || ||| ||| |||| || | | || Sbjct 754 GGTGAAGAATTCGAGCAACTTTATGAGAAATATGAGCGTGAAGGTCGTGCCAATCGCACT 695 Query 112260 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 || |||| ||||| || ||| | || ||||| || ||||| || ||| Sbjct 694 GTTAAAGCTCAAACCTTGTGGTTTGCCATTATAGAGGCTCAAGTGGAAACTGGCACTCCA 635 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 |||||||| || || || || ||||| | |||||||||||| ||||| | || ||| Sbjct 634 TATATGCTCTATAAGGATGCTTGTAATCGCAAGAGTAATCAACAGAATCTAGGCACTATC 575 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 ||| | ||| | || || ||||| | |||| | | | ||||| | ||||| Sbjct 574 AAGTGCAGCAATTTATGCACTGAAATTGTAGAATATTCGGCACCGGATGAAATTGCTGTT 515 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 112499 ||||| | || ||||| || ||| | || ||| | ||||| ||||| | |||| Sbjct 514 TGTAATTTAGCCTCAATTGCACTCAATATGTTTGTCAACCCAGA---CAAGACTTATGAT 458 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | | |||||||| | |||||| | |||| ||| ||| || | |||| | | || || Sbjct 457 TTTAAAAAACTCAAAGAAGTTGCTAAAATTGTAACACGTAATTTGAACAAAATCATAGAC 398 Query 112560 AGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 | |||| ||||| | ||| | ||| || |||||| | || ||||| || Sbjct 397 ATCAATTACTACCCGCTGCCGGAGGCCAAGCGT---TCAAATATGCGTCATCGTCCCATA 341 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 112676 ||| | || || ||||| |||| |||| ||| || || || | ||| ||| Sbjct 340 GGTATTGGAGTACAAGGATTCGCAGATGCATTGATACTCATGCGTTATCCATATGAAAGT 281 Query 112677 GACGAAGC---GAAG-GAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732 || ||||| ||| ||||||| | |||||||| || || ||| | | || | Sbjct 280 GAGGAAGCATTTAAGCTAAATCAA----CAAATATTTGAAACGATTTATTATGGTGCCTT 225 Query 112733 TGAGGCGAGTTCGGAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790 || || || | |||||||| ||| | || ||||| |||||||| | || ||| || Sbjct 224 GGAAGCCAGCTGTGAGTTGGCTGAGAAGCTG--GGTCCCTATGAAACTTATGCGGGCTCA 167 Query 112791 CCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACT 112848 || | ||| |||||| | | || | |||||||||| || | ||| | || || Sbjct 166 CCTG--TCAGCAAGGGAATTTTACAGTATGATATGTGGCAA-AAAACACCTA-CTGATCT 111 Query 112849 ACG--ACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT- 112905 | | | |||| | || ||||| || | | || | |||| | ||||| Sbjct 110 ATGGAATTGGGCGGAGCTGAAGGAGAAAATTGCTAAACATGGCGTGCGTA--ATTCTTTG 53 Query 112906 -TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATG 112956 | || ||||||||||| ||||||||||| ||||||||| |||| ||||||| Sbjct 52 CTCATTGCACCAATGCCTACAGCCTCCACTGCACAAATCATGGGCAATAATG 1 >seq2021 Length=2943 Score = 132 bits (146), Expect = 6e-26 Identities = 467/719 (65%), Gaps = 24/719 (3%) Strand=Plus/Plus Query 112082 GTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 112140 |||| || ||| | || | ||||| ||||| || || | |||||||| | || |||| Sbjct 839 GTGCACGAGATTTATTTTATGCTCTATGGATACCCGACTTATTCATGAAACGTGTGGAGG 898 Query 112141 -AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTG 112199 ||| |||| ||||||| ||| | || ||| ||||| ||||| || || | | Sbjct 899 CAGA-TGGCGATTGGTCACTCATGTGCCCACACAAGTGCCCCGGACTACATGAAGTTTGG 957 Query 112200 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACG 112259 ||||| || || || || || || || ||| ||| |||| || | | || Sbjct 958 GGTGAAGAATTCGAGCAACTTTATGAGAAATATGAGCGTGAAGGTCGTGCCAATCGCACT 1017 Query 112260 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 || |||| ||||| || ||| | || |||| || ||||| || ||| Sbjct 1018 GTTAAAGCTCAAACCTTGTGGTTTGCCATTATAGAGGCTCAGGTGGAAACTGGCACTCCA 1077 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 |||||||| || || || || ||||| | |||||||||||| ||||| | || ||| Sbjct 1078 TATATGCTCTATAAGGATGCTTGTAATCGCAAGAGTAATCAACAGAATCTAGGCACTATC 1137 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 ||| | ||| | || || ||||| | |||| | | | ||||| | ||||| Sbjct 1138 AAGTGCAGCAATTTATGCACTGAAATTGTAGAATATTCGGCACCGGATGAAATTGCTGTT 1197 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTGAT 112499 ||||| | || ||||| || ||| | || ||| | ||||| ||||| | |||| Sbjct 1198 TGTAATTTAGCCTCAATTGCACTCAATATGTTTGTCAACCCAGA---CAAGACTTATGAT 1254 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | | |||||||| | |||||| | |||| ||| ||| || | |||| | | || || Sbjct 1255 TTTAAAAAACTCAAAGAAGTTGCTAAAATTGTAACACGTAATTTGAACAAAATCATAGAC 1314 Query 112560 AGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 | |||| ||||| | ||| | ||| || |||||| | || ||||| || Sbjct 1315 ATCAATTACTACCCGCTGCCGGAGGCCAAGCGT---TCAAATATGCGTCATCGTCCCATA 1371 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 112676 ||| | || || ||||| |||| |||| ||| || || || | ||| ||| Sbjct 1372 GGTATTGGCGTACAAGGATTCGCAGATGCATTAATACTCATGCGTTATCCATATGAAAGT 1431 Query 112677 GACGAAGC---GAAG-GAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCT 112732 || ||||| ||| ||||||| | |||||||| || || ||| | | || | Sbjct 1432 GAGGAAGCATTTAAGCTAAATCAA----CAAATATTTGAAACGATTTATTATGGTGCCTT 1487 Query 112733 TGAGGCGAGTTCGGAGTTGGC--AGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTC 112789 || || || | |||||||| ||| | || ||||| |||||||| | || ||| || Sbjct 1488 GGAAGCCAGCTGTGAGTTGGCTGAGAAGCTG--GGTCCCTATGAAACTTATGCGGGCTC 1544 >seq12187 Length=3570 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 102090 CTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 102149 || ||| | ||||| |||| | || | || | ||||| || |||||||| ||| Sbjct 1307 CTATTTAACGCCATTGAAACGCTGCCTGCTGTTAAGAAGAAGGCTGATTGGGCCATGGCC 1366 Query 102150 TGGTT-TGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 102208 ||| | | || ||| ||| |||| |||||| | | |||||||| |||||| Sbjct 1367 TGGATCTCATCGAAA-TCGGCCAATTTTGGTGAGCGTATTATAGCATTTGCAGCTGTTGA 1425 Query 102209 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 102268 |||||| |||||| ||| ||| | |||||| ||||| ||||| || |||||||| Sbjct 1426 GGGTATTTTCTTCAGTGGCAGTTTCGCCTCTATTTTCTGGCTTAAGAAACGTGGTCTCAT 1485 Query 102269 GCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| || || |||||||| ||||| || || |||||||| || Sbjct 1486 GCCTGGCCTGACATTCTCCAATGAGCTGATTTCACGTGACGAAGG 1530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620501482115280