Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1845 89.7 6e-13 seq18404 82.4 9e-11 seq5057 82.4 9e-11 >seq1845 Length=2059 Score = 89.7 bits (98), Expect = 6e-13 Identities = 162/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 167536 GCATCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATG 167595 ||||| || ||||| | | ||||| ||||||||||||| |||||| | ||||| || Sbjct 1672 GCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATA 1613 Query 167596 TTATTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTTTCAGCGAGGGAAACTTCG 167655 ||||| || || | | | | ||||| || || || || | ||| ||||| Sbjct 1612 TTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGGACACTTCA 1553 Query 167656 CCGTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTCA 167715 ||||| || || ||| |||||||||||| | | | ||| ||||| ||||||| ||| Sbjct 1552 CCGTGATGATAGGCAGACTTTTCAGCCACCGAACCAGACAATTGTGCCACCTTCACTTCA 1493 Query 167716 TCTTTGAGATTCTTTTGGAAACA--TGAATACATAACCTTGCGTTGAGAAGGTTT 167768 | ||| ||| || ||| || ||||| | ||||| || ||| |||||| Sbjct 1492 TGCTTGTCATTACGTTTGAAGCAAGTGAAT--AGCACCTTACGCTGACCAGGTTT 1440 >seq18404 Length=2142 Score = 82.4 bits (90), Expect = 9e-11 Identities = 79/98 (81%), Gaps = 4/98 (4%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC-GT 136775 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |||| Sbjct 1303 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGGTTCGATCCCCTCA 1244 Query 136776 TGGG--AACAG-CTTTTAGATATATTTTTTGTATGTAT 136810 |||| || || |||| |||||||||| | || || Sbjct 1243 TGGGCCAATAGATTTTTTTCTATATTTTTTTTTTGAAT 1206 >seq5057 Length=1555 Score = 82.4 bits (90), Expect = 9e-11 Identities = 79/98 (81%), Gaps = 4/98 (4%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC-GT 136775 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |||| Sbjct 1369 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGGTTCGATCCCCTCA 1428 Query 136776 TGGG--AACAG-CTTTTAGATATATTTTTTGTATGTAT 136810 |||| || || |||| |||||||||| | || || Sbjct 1429 TGGGCCAATAGATTTTTTTCTATATTTTTTTTTTGAAT 1466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588747411052200