Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq1845 156 5e-33
seq24243 143 3e-29
>seq1845
Length=2059
Score = 156 bits (172), Expect = 5e-33
Identities = 302/443 (68%), Gaps = 2/443 (0%)
Strand=Plus/Minus
Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350
|| || || || || || | ||||| || || ||||| ||||| |||| || || |
Sbjct 1849 CCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACCAT 1790
Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 168410
| |||||||| | | |||||||| | ||| | || | || |||||| | ||
Sbjct 1789 TTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTGGG 1730
Query 168411 TCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGT-CTGAGAAGC 168469
| | ||||| |||| ||| | | | |||||||||||| || | || ||| | ||
Sbjct 1729 TGATAGATCATGCGTGCCAATGGCGACAATTTTGTGAAAATATAACGCGCACTG-GCTGC 1671
Query 168470 ATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTT 168529
||| |||||||| | | ||| || ||||||||||||| || || | || ||||| ||
Sbjct 1670 ATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATATT 1611
Query 168530 GTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTCACC 168589
|| || || ||| | |||||| |||||||| || |||||| ||||||||
Sbjct 1610 ATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGGACACTTCACC 1551
Query 168590 ATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATC 168649
|| || || |||||||| || || || | | | || |||||||||||||| |||||
Sbjct 1550 GTGATGATAGGCAGACTTTTCAGCCACCGAACCAGACAATTGTGCCACCTTCACTTCATG 1491
Query 168650 CTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCATC 168709
|||| ||| | |||||||| | | ||| || | ||| ||| || | || ||
Sbjct 1490 CTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGACCAGGTTTAAAGCCGTC 1431
Query 168710 CGCCATATGGGCAATAGAGCGCT 168732
| ||||| || || |||||||
Sbjct 1430 CACCATAGAGGGTATGGAGCGCT 1408
>seq24243
Length=2007
Score = 143 bits (158), Expect = 3e-29
Identities = 299/443 (67%), Gaps = 2/443 (0%)
Strand=Plus/Minus
Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350
|| || || || || || | ||||| || || ||||| ||||| |||| || || |
Sbjct 1552 CCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACCAT 1493
Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 168410
| |||||||| | | |||||||| | ||| | || | || |||||| | ||
Sbjct 1492 TTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTGGG 1433
Query 168411 TCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGT-CTGAGAAGC 168469
| | ||||| |||| ||| | | | |||||||||||| || | || ||| | ||
Sbjct 1432 TGATAGATCATGCGTGCCAATGGCGACAATTTTGTGAAAATATAACGCGCACTG-GCTGC 1374
Query 168470 ATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTT 168529
||| |||||||| | | ||| || ||||||||||||| || || | || ||||| ||
Sbjct 1373 ATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATATT 1314
Query 168530 GTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTCACC 168589
|| || || ||| | |||||| |||||||| || |||||| ||||||||
Sbjct 1313 ATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGGACACTTCACC 1254
Query 168590 ATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATC 168649
|| || || || ||||| || || || | | | || ||||||||| |||| |||||
Sbjct 1253 GTGATGATAGGCGGACTTTTCAGCCACCGAACCAGACAATTGTGCCACTTTCACTTCATG 1194
Query 168650 CTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCATC 168709
|||| ||| | |||||||| | | ||| || | ||| ||| || | || ||
Sbjct 1193 CTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGGCCAGGTTTAAAGCCGTC 1134
Query 168710 CGCCATATGGGCAATAGAGCGCT 168732
| |||| || || |||||||
Sbjct 1133 CACCATGGAGGGTATGGAGCGCT 1111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589751821076760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |