Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1845 156 5e-33 seq24243 143 3e-29 >seq1845 Length=2059 Score = 156 bits (172), Expect = 5e-33 Identities = 302/443 (68%), Gaps = 2/443 (0%) Strand=Plus/Minus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 || || || || || || | ||||| || || ||||| ||||| |||| || || | Sbjct 1849 CCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACCAT 1790 Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 168410 | |||||||| | | |||||||| | ||| | || | || |||||| | || Sbjct 1789 TTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTGGG 1730 Query 168411 TCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGT-CTGAGAAGC 168469 | | ||||| |||| ||| | | | |||||||||||| || | || ||| | || Sbjct 1729 TGATAGATCATGCGTGCCAATGGCGACAATTTTGTGAAAATATAACGCGCACTG-GCTGC 1671 Query 168470 ATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTT 168529 ||| |||||||| | | ||| || ||||||||||||| || || | || ||||| || Sbjct 1670 ATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATATT 1611 Query 168530 GTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTCACC 168589 || || || ||| | |||||| |||||||| || |||||| |||||||| Sbjct 1610 ATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGGACACTTCACC 1551 Query 168590 ATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATC 168649 || || || |||||||| || || || | | | || |||||||||||||| ||||| Sbjct 1550 GTGATGATAGGCAGACTTTTCAGCCACCGAACCAGACAATTGTGCCACCTTCACTTCATG 1491 Query 168650 CTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCATC 168709 |||| ||| | |||||||| | | ||| || | ||| ||| || | || || Sbjct 1490 CTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGACCAGGTTTAAAGCCGTC 1431 Query 168710 CGCCATATGGGCAATAGAGCGCT 168732 | ||||| || || ||||||| Sbjct 1430 CACCATAGAGGGTATGGAGCGCT 1408 >seq24243 Length=2007 Score = 143 bits (158), Expect = 3e-29 Identities = 299/443 (67%), Gaps = 2/443 (0%) Strand=Plus/Minus Query 168291 CCCGTACCGATACCTTCGGTTCCATTCACGAGAACCATTGGTATGGTTGGCATGTAAAAG 168350 || || || || || || | ||||| || || ||||| ||||| |||| || || | Sbjct 1552 CCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACCAT 1493 Query 168351 TCTGGTTCAATTGAGCGCCCATCATCATCCAAGTAGTTGAGGATCGGGTCATCCCGAGGA 168410 | |||||||| | | |||||||| | ||| | || | || |||||| | || Sbjct 1492 TTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTGGG 1433 Query 168411 TCAAAGATCTTGCGAGCCTCTTTGGTAAGTTTTGTGAAAATGTACCTCGT-CTGAGAAGC 168469 | | ||||| |||| ||| | | | |||||||||||| || | || ||| | || Sbjct 1432 TGATAGATCATGCGTGCCAATGGCGACAATTTTGTGAAAATATAACGCGCACTG-GCTGC 1374 Query 168470 ATCCTTACCACCCATGAGACGCGTACCAAATTGACCACACGGTTCAAGAAGGTTAATGTT 168529 ||| |||||||| | | ||| || ||||||||||||| || || | || ||||| || Sbjct 1373 ATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATATT 1314 Query 168530 GTTTGAACCCGTGTAGTCGTTTGCCAACTTAACAATCGTGTCCGCTAAGGATACTTCACC 168589 || || || ||| | |||||| |||||||| || |||||| |||||||| Sbjct 1313 ATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGGACACTTCACC 1254 Query 168590 ATGGTGGTACGCAGACTTGTCCGCGACATATGCCGCCAGTTGTGCCACCTTCATTTCATC 168649 || || || || ||||| || || || | | | || ||||||||| |||| ||||| Sbjct 1253 GTGATGATAGGCGGACTTTTCAGCCACCGAACCAGACAATTGTGCCACTTTCACTTCATG 1194 Query 168650 CTTGAGATTCTTATGGAAGCAAGCATACATCACTTTCCTCTGTGAAGGCTTGAGACCATC 168709 |||| ||| | |||||||| | | ||| || | ||| ||| || | || || Sbjct 1193 CTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGGCCAGGTTTAAAGCCGTC 1134 Query 168710 CGCCATATGGGCAATAGAGCGCT 168732 | |||| || || ||||||| Sbjct 1133 CACCATGGAGGGTATGGAGCGCT 1111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589751821076760