Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq2698 129 9e-25 seq2789 127 3e-24 seq4088 111 2e-19 seq2305 104 4e-17 seq17421 91.5 2e-13 >seq2698 Length=11445 Score = 129 bits (142), Expect = 9e-25 Identities = 135/175 (77%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 27984 TGTAAAAGTACGAGAAACAACATCGCGTTGTTGTTCTGGGGTTAGAGAATTAAATCTAAC 28043 ||| ||||| | | || |||||| |||||||||| || |||| ||| ||||||||||| Sbjct 5494 TGTGAAAGTTCTGGTAATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAAC 5435 Query 28044 GGCATAACCAGATACTCGAATTGTCAATTGTGGGTATTTTTCTGGAAATTTAATTGCATC 28103 ||||| || || || | |||||| || || ||||||||||| ||| || | |||||| Sbjct 5434 AGCATATCCTGAAACCCTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATC 5375 Query 28104 TTCTAAAGTTTCTTTATTCAAGA-CATTTACATTTAAATGTTGACCCCCTTCAAC 28157 | |||||||| | |||| | ||||||||||||||||| || |||||||| Sbjct 5374 AAGAAGTGTTTCTTT-TCGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAAC 5321 >seq2789 Length=15484 Score = 127 bits (140), Expect = 3e-24 Identities = 737/1156 (64%), Gaps = 48/1156 (4%) Strand=Plus/Plus Query 28837 TGTTTACCGTCATTAAATGGTCTTACATCCAATGCT-CCGATATACCCACATACTCTACG 28895 ||||| || | |||||| || ||| ||| | ||| || | ||| ||||||||||| | Sbjct 2130 TGTTTTCCTTTATTAAACGGCCTTGAATC-AGGGCTACCTAAATATCCACATACTCTTCT 2188 Query 28896 CCTTACGTGTAGCTTTTTCTG-ATCGCGATTTCCACAAGAAGGACACTCATAACCTTTAC 28954 | || || ||||| || ||| |||| |||||| |||||| | |||| |||| Sbjct 2189 TATCACAGATA-CTTTTCTTGCATCATGATTACCACAACTAGGACAAGAAAAACCCTTAC 2247 Query 28955 TTGTAGGGACGGTTTCCCCATTATAGCCACATACTAAGCATTTATCAACTGGGATATTTG 29014 |||| | ||| || ||||| |||||| | | || | |||| ||| |||||| Sbjct 2248 TTGTGCAATCAAATTCGCCTTTATATCCACATTCATAACACTCGTCAATTGGAGTATTTG 2307 Query 29015 AACCATAGTACGGGGTTGTTTTGTAAGCATAATCCCACACATCTTCAAGGGCTTTAAGAT 29074 ||||| || || ||| ||| | ||||||| |||||||| | ||||||| || Sbjct 2308 TTCCATAATAAGGCACAAATTTATAACTAAAATCCCAAACATCTTCTAATGCTTTAATAT 2367 Query 29075 TATTCTTTACATCTGGGAATTCCCCGTAAGAAATAAATCCACCCGTACTATATTTTATAA 29134 | || | | || || |||| |||||| ||||||| ||||| | | ||| | | Sbjct 2368 TTTTTCTCATATTAGGATATTCACCGTAACAAATAAAGCCACCATTTGCAAATTCTGGAT 2427 Query 29135 ACTGTCTTTCAAAATCGATCTTCTCGTATGGGTCACAATTATACTCTA-CATCTAGATGG 29193 | | |||||||| || || || ||||| | | | || | || |||| | ||| Sbjct 2428 ATGATTTTTCAAAAAGAATTTTTTCATATGGATTT-ACTGATTTTTTAACATCCAAGTGG 2486 Query 29194 AAACTATTCTGATAATAACCCTTTTCATGTACGGAATT--ATTAT-----ATAGTTTACT 29246 |||||||| ||||||| ||| || |||| || || || || ||| | Sbjct 2487 AAACTATTTGTATAATAATTCTTGTC-TGTAACACCTTTAATAATGCCAAATTCTTTTTT 2545 Query 29247 ATCTATATTACAGAACCTCTCACACAGGGATTCAGAAGGAGTTGCATAGAGAGAGAATGA 29306 ||||| | || || || ||||| || |||| || || ||| | | || Sbjct 2546 ATCTAATTGGCAAAATCTATCACAAAGATTTTCACTTGGCGTGCTATATAAACTAAAACC 2605 Query 29307 AAATCCGGTGTCTTCTGTCCACACATCAACAATCGATTTCATCTTTCTTAATACCGCAAG 29366 | |||| || || | | |||| ||| || | | | | ||| |||| | | Sbjct 2606 ATATCCTGTTTCATTTTTCCAGCTATCTACTGCCTCTCTTAATTTT-TTAACAATAAATA 2664 Query 29367 AGC--AAATTCTTGTTTTTCTGTATTTTCGAATATGTGA---GATTCATCATTAAATTTT 29421 | | |||||||| ||| ||| ||| || || || || |||||| || ||| || Sbjct 2665 ATCCAAAATTCTT-TTTATCTTCATTGTCAAACATATGTTCTGATTCACTATCAAACATT 2723 Query 29422 --ATAATCTGACATACTTCATGTAATCCAATATATCCACAAGAAACACTAGCTCGACCAT 29479 || | ||| |||||| || ||| ||||| || | |||| |||| |||| Sbjct 2724 GCATTAACTG-----CTTCATTTATTCCTATATAGCCTAATGAAATTGATGCTCTTCCAT 2778 Query 29480 TCTCAAACAATTGCATAATCTCATCATCTGCGTTTAAACGTGCCATAGCGCCATGCAT-- 29537 | | ||| | || ||||| ||||| |||| | |||| || || ||| | ||| Sbjct 2779 TTTTAAAAATTTCAATAATATCATCTTCTG-GATTAA--GTCTTATTCCGCAA-GCACCT 2834 Query 29538 ---GTATAGGATA--GGTGCAACTGATGCCTTTATTCCTCGGAACCGCTCTATGCGCTGC 29592 ||||| ||| || ||||| || |||| ||| || || || || | | Sbjct 2835 TCAGTATACAATATGGGGGCAACCTTAGCTTTTACACCTTTGAGCCTTTCAATTCTTGTC 2894 Query 29593 ATAAGTCCATTCCTGACGATCTCCATTCGTTCTGTTAGCAAAGCCATAAATTTCTGCTTA 29652 || | | || | | || | | || || | || | | ||||||| | | Sbjct 2895 ATTAATGATTTTTTAGCAATATTTAATCTTTTTTCTAATATAAAATTAAATTTTTCAAAA 2954 Query 29653 TCACCACCACAATCT---AGTGCAATTCTAGGAAGATTCAGAGTAATCACACCCAAGTTT 29709 | ||||| | || | ||| ||||| |||| ||| | | ||| |||||| || || Sbjct 2955 TTACCACATCCTGCTTCAATTGCTATTCTGGGAATATTTAAACTAACCACACCTAAATTA 3014 Query 29710 TGACGACCATCGTGGAT-CTCTTCACCATGTTCATTTTCCCATCGACCCAA--GAATGAA 29766 | | |||||||| || || || ||||| ||||| ||| || || || ||| Sbjct 3015 TTTCTTCCATCGTGAATACTATT-ACCATTTTCATCTTC--ATAAACAGAAAGGAAGCTT 3071 Query 29767 CGACAACCCATGGGGGATTTATAAGAACCTGTGACCTTTACCACTTGATCGTAACTCATA 29826 | || ||||| || | ||| | ||||| || | | || ||||| || ||| | | | Sbjct 3072 CTGCACCCCATTGGCGTCTTAAAGGAACCAGTTGTCCTAACAACTTGCTCATAATTTAAA 3131 Query 29827 ATATCCGGATATATACGCTTAGACGAACACTCAAGAGCAAGTTGTTTTATATCGTAATGA 29886 ||||| ||||| || || | | ||||| ||||| || |||||||||||||| |||| | Sbjct 3132 ATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTA 3191 Query 29887 GGATCCCAAGGATTCAGATTAAGACCGTCTTTAAGAGTGAATACAAGTTTAGGAAATACA 29946 ||||| | | | | ||| || ||||| | | || |||||||| |||||||| Sbjct 3192 GGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACT 3251 Query 29947 GCAGTTTCTTTATCTT 29962 || |||| ||||| || Sbjct 3252 GCCGTTTTTTTATTTT 3267 >seq4088 Length=5036 Score = 111 bits (122), Expect = 2e-19 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 112202 TGCGCTGTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCGCTGGTTCGA 112261 |||||||||||||||||||||||||||||| ||||||| || |||||||||||||| Sbjct 4247 TGCGCTGTTAGCTCAGTTGGATAGAGCAACCGCCTTCTAAGCGGTAGGTCGCTGGTTCGA 4306 Query 112262 ATCCAGCACGGCGCACCAAAA 112282 |||||||||||||||||||| Sbjct 4307 GTCCAGCACGGCGCACCAAAA 4327 >seq2305 Length=5865 Score = 104 bits (114), Expect = 4e-17 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 113563 TTAATGCATCGTTAGCTCAGCAGGTAGAGCATGGGACTTTTAATCTCAGGGTCGCTGGTT 113622 ||| ||||| |||||||||| ||||||||| ||||||||||||| | ||||||||||| Sbjct 4043 TTATTGCATTGTTAGCTCAGTTGGTAGAGCAACGGACTTTTAATCTGAAGGTCGCTGGTT 4102 Query 113623 CGAATCCAGCACGATGTACCAG 113644 |||||||||||| ||| ||||| Sbjct 4103 CGAATCCAGCACAATGCACCAG 4124 >seq17421 Length=2767 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 112208 GTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCGCTGGTTCGAATCCAG 112267 |||||||||||||||||||||||| ||||||| || |||||||||||| ||||||| Sbjct 2618 GTTAGCTCAGTTGGATAGAGCAACCGCCTTCTAAGCGGTAGGTCGCTGGTTCAAATCCAG 2559 Query 112268 CACGGCGCACCAA 112280 ||||||| ||||| Sbjct 2558 CACGGCGTACCAA 2546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752312704669560