Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_015269.1
Length=118351
Score E
Sequences producing significant alignments: (Bits) Value
seq17421 89.7 4e-13
seq2789 84.2 2e-11
>seq17421
Length=2767
Score = 89.7 bits (98), Expect = 4e-13
Identities = 58/64 (91%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 30441 CCTCGCTGGGATTCGAACCCATTAAAACAGCTCAACCGAGATAGTAGGTTTAATTTACTC 30500
||| |||||||||||||||||||||||||||| |||||||||| || |||||||| | ||
Sbjct 1410 CCTTGCTGGGATTCGAACCCATTAAAACAGCTTAACCGAGATACTAAGTTTAATTAAATC 1469
Query 30501 TGAC 30504
||||
Sbjct 1470 TGAC 1473
>seq2789
Length=15484
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 53234 TGAGAAAGAAGTCTATGACGCTTGTCAGGGTTTAGAATATGAAATCAATACCATGTTCAA 53293
||| |||||| | ||| |||| ||| || |||||||||||||| ||||| || |
Sbjct 3437 TGAAAAAGAATGTTTTGATGCTTTTCAAGGATTAGAATATGAAATTAATACTTTGCATAC 3378
Query 53294 CTCTAATGGACAGAGTCCATTTATTACCTTTGGTTTTGGTCTAGGAACTTCTTGGGAAGC 53353
| | |||||||| | |||||| |||| ||||||||||| || |||| | | || |
Sbjct 3377 CGCAAATGGACAAACCCCATTTGTTACTTTTGGTTTTGGACTTGGAATTACAAAAGAGGA 3318
Query 53354 ACGTCTAGTACAGAAAGCAATACTGAAAGTACGCATGGATGGTTTAGGTATCAATAAACG 53413
| | || | || ||| ||||| | | | | || |||| ||||| | ||||||
Sbjct 3317 AAGATTAATTCAAAAATCAATATTAAGAAACAGAATAAATGGGTTAGGAAAAAATAAAAA 3258
Query 53414 TACAGCTATCTTCCCGAAACTGGTATTTG 53442
|| || | || || ||||| || ||||
Sbjct 3257 AACGGCAGTATTTCCAAAACTTGTTTTTG 3229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 378455134697768
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |