Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_015269.1 Length=118351 Score E Sequences producing significant alignments: (Bits) Value seq17421 89.7 4e-13 seq2789 84.2 2e-11 >seq17421 Length=2767 Score = 89.7 bits (98), Expect = 4e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 30441 CCTCGCTGGGATTCGAACCCATTAAAACAGCTCAACCGAGATAGTAGGTTTAATTTACTC 30500 ||| |||||||||||||||||||||||||||| |||||||||| || |||||||| | || Sbjct 1410 CCTTGCTGGGATTCGAACCCATTAAAACAGCTTAACCGAGATACTAAGTTTAATTAAATC 1469 Query 30501 TGAC 30504 |||| Sbjct 1470 TGAC 1473 >seq2789 Length=15484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 53234 TGAGAAAGAAGTCTATGACGCTTGTCAGGGTTTAGAATATGAAATCAATACCATGTTCAA 53293 ||| |||||| | ||| |||| ||| || |||||||||||||| ||||| || | Sbjct 3437 TGAAAAAGAATGTTTTGATGCTTTTCAAGGATTAGAATATGAAATTAATACTTTGCATAC 3378 Query 53294 CTCTAATGGACAGAGTCCATTTATTACCTTTGGTTTTGGTCTAGGAACTTCTTGGGAAGC 53353 | | |||||||| | |||||| |||| ||||||||||| || |||| | | || | Sbjct 3377 CGCAAATGGACAAACCCCATTTGTTACTTTTGGTTTTGGACTTGGAATTACAAAAGAGGA 3318 Query 53354 ACGTCTAGTACAGAAAGCAATACTGAAAGTACGCATGGATGGTTTAGGTATCAATAAACG 53413 | | || | || ||| ||||| | | | | || |||| ||||| | |||||| Sbjct 3317 AAGATTAATTCAAAAATCAATATTAAGAAACAGAATAAATGGGTTAGGAAAAAATAAAAA 3258 Query 53414 TACAGCTATCTTCCCGAAACTGGTATTTG 53442 || || | || || ||||| || |||| Sbjct 3257 AACGGCAGTATTTCCAAAACTTGTTTTTG 3229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378455134697768