Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_015296.1 Length=157061 Score E Sequences producing significant alignments: (Bits) Value seq1262 96.9 3e-15 seq4032 95.1 1e-14 seq2410 95.1 1e-14 >seq1262 Length=72559 Score = 96.9 bits (106), Expect = 3e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 137231 GGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137289 |||||| ||||||||| |||||||||| ||||||||||||| | ||||||||||||||| Sbjct 63894 GGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAAG 63835 Query 137290 TCCAGCCAGGGTCACCAA 137307 |||||| ||| |||||| Sbjct 63834 TCCAGCAGGGGCCACCAA 63817 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 137633 TAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690 ||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 60811 TAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCTGGTTCGAGTCCAGC 60754 Score = 84.2 bits (92), Expect = 2e-11 Identities = 59/66 (89%), Gaps = 1/66 (2%) Strand=Plus/Minus Query 137231 GGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137289 ||| || ||||||||| |||||||||| ||||||||||||| | ||||||||||||||| Sbjct 64479 GGCTCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAAG 64420 Query 137290 TCCAGC 137295 |||||| Sbjct 64419 TCCAGC 64414 >seq4032 Length=2654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 137633 TAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGCCA 137692 ||||||||| |||||||||||||||||||||||||||||||||| |||| |||| ||| Sbjct 1305 TAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAAGTTCGAGTCTTGCAT 1364 Query 137693 TCGTCGCCAAAT 137704 |||||||||| Sbjct 1365 GGGTCGCCAAAT 1376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 137633 TAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGCCA 137692 ||||||||| |||||||||||||||||||||||||||||||||| |||| |||| ||| Sbjct 1568 TAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAAGTTCGAGTCTTGCAT 1627 Query 137693 TCGTCGCCAAAT 137704 |||||||||| Sbjct 1628 GGGTCGCCAAAT 1639 >seq2410 Length=3205 Score = 95.1 bits (104), Expect = 1e-14 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 137232 GCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAGT 137290 ||||| ||||||||| |||||||||| ||||||||||||| | |||||||||||||||| Sbjct 951 GCCCCTTAGCTCAGTTGGTTAGAGCAAACGACTCATAATCGTTAGGTCGCTGGTTCAAGT 1010 Query 137291 CCAGCCAGGGTCACCAA 137307 ||||| ||| |||||| Sbjct 1011 CCAGCAGGGGCCACCAA 1027 Score = 86.0 bits (94), Expect = 6e-12 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 137225 AATTTTGGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGG 137283 || || | |||| ||||||||| |||||||||| ||||||||||||| | ||||||||| Sbjct 1775 AAGTTAGCCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGG 1834 Query 137284 TTCAAGTCCAGC 137295 |||||||||||| Sbjct 1835 TTCAAGTCCAGC 1846 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 137230 TGGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAA 137288 || |||| ||||||||| |||||||||| ||||||||||||| |||||||||||||| Sbjct 2301 TGCCCCCTTAGCTCAGTTGGTTAGAGCATACGACTCATAATCGTCAGGTCGCTGGTTCAA 2360 Query 137289 GTCCAGCCAGGGTCACCA 137306 ||||||| | | ||||| Sbjct 2361 GTCCAGCAGGAGGCACCA 2378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 502272186198840