Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_015296.1
Length=157061
Score E
Sequences producing significant alignments: (Bits) Value
seq1262 96.9 3e-15
seq4032 95.1 1e-14
seq2410 95.1 1e-14
>seq1262
Length=72559
Score = 96.9 bits (106), Expect = 3e-15
Identities = 69/78 (88%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 137231 GGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137289
|||||| ||||||||| |||||||||| ||||||||||||| | |||||||||||||||
Sbjct 63894 GGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAAG 63835
Query 137290 TCCAGCCAGGGTCACCAA 137307
|||||| ||| ||||||
Sbjct 63834 TCCAGCAGGGGCCACCAA 63817
Score = 87.8 bits (96), Expect = 2e-12
Identities = 54/58 (93%), Gaps = 0/58 (0%)
Strand=Plus/Minus
Query 137633 TAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 137690
||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 60811 TAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCTGGTTCGAGTCCAGC 60754
Score = 84.2 bits (92), Expect = 2e-11
Identities = 59/66 (89%), Gaps = 1/66 (2%)
Strand=Plus/Minus
Query 137231 GGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAG 137289
||| || ||||||||| |||||||||| ||||||||||||| | |||||||||||||||
Sbjct 64479 GGCTCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAAG 64420
Query 137290 TCCAGC 137295
||||||
Sbjct 64419 TCCAGC 64414
>seq4032
Length=2654
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 137633 TAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGCCA 137692
||||||||| |||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct 1305 TAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAAGTTCGAGTCTTGCAT 1364
Query 137693 TCGTCGCCAAAT 137704
||||||||||
Sbjct 1365 GGGTCGCCAAAT 1376
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 137633 TAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGCCA 137692
||||||||| |||||||||||||||||||||||||||||||||| |||| |||| |||
Sbjct 1568 TAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAAGTTCGAGTCTTGCAT 1627
Query 137693 TCGTCGCCAAAT 137704
||||||||||
Sbjct 1628 GGGTCGCCAAAT 1639
>seq2410
Length=3205
Score = 95.1 bits (104), Expect = 1e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 137232 GCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAAGT 137290
||||| ||||||||| |||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 951 GCCCCTTAGCTCAGTTGGTTAGAGCAAACGACTCATAATCGTTAGGTCGCTGGTTCAAGT 1010
Query 137291 CCAGCCAGGGTCACCAA 137307
||||| ||| ||||||
Sbjct 1011 CCAGCAGGGGCCACCAA 1027
Score = 86.0 bits (94), Expect = 6e-12
Identities = 63/72 (88%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 137225 AATTTTGGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGG 137283
|| || | |||| ||||||||| |||||||||| ||||||||||||| | |||||||||
Sbjct 1775 AAGTTAGCCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGG 1834
Query 137284 TTCAAGTCCAGC 137295
||||||||||||
Sbjct 1835 TTCAAGTCCAGC 1846
Score = 84.2 bits (92), Expect = 2e-11
Identities = 66/78 (85%), Gaps = 1/78 (1%)
Strand=Plus/Plus
Query 137230 TGGCCCCGTAGCTCAGT-GGTTAGAGCAGTCGACTCATAATCGATTGGTCGCTGGTTCAA 137288
|| |||| ||||||||| |||||||||| ||||||||||||| ||||||||||||||
Sbjct 2301 TGCCCCCTTAGCTCAGTTGGTTAGAGCATACGACTCATAATCGTCAGGTCGCTGGTTCAA 2360
Query 137289 GTCCAGCCAGGGTCACCA 137306
||||||| | | |||||
Sbjct 2361 GTCCAGCAGGAGGCACCA 2378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 502272186198840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |