Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_015457.1 Length=165919 Score E Sequences producing significant alignments: (Bits) Value seq2789 116 4e-21 seq2698 105 7e-18 >seq2789 Length=15484 Score = 116 bits (128), Expect = 4e-21 Identities = 490/762 (64%), Gaps = 19/762 (2%) Strand=Plus/Plus Query 41641 ATGTCAGGATACATTCTTTTGCTTGCGCATTCTAAAGCAAGCTGCTTAATATCATAGTTC 41700 || ||||||||||||| || ||| ||||| | || || || || |||||||| || Sbjct 3132 ATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTA 3191 Query 41701 GGATCGTCTTTATAAAGATTAACACCTTCTTCAACGAACATAACAAGTTTAGGGAAAATA 41760 |||||| ||| ||| ||||||| | | | ||||||||| || || | Sbjct 3192 GGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACT 3251 Query 41761 GGAGTTATCCCGTCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATC 41820 | ||| | | || | || || || | ||| | | |||| ||| ||||| Sbjct 3252 GCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATT 3311 Query 41821 ATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGCCC 41879 | || ||| | || | | | || ||||| || || ||||| || ||||| || Sbjct 3312 AATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTCC 3370 Query 41880 GTTTGAACTAAAAAGAGTATTTACTTCATATTCATAAGCTTGAAATGCATCGTATACGTC 41939 |||| || | |||||| | ||||||||| | ||||||| ||||| | || Sbjct 3371 ATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAACATTC 3430 Query 41940 TTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCATC 41999 |||||| |||| | | |||| || | || | ||| | ||||||||| || Sbjct 3431 TTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTC 3490 Query 42000 TTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTACATT 42056 || ||| ||| | || || |||| ||||||| | ||| || | ||| | ||| Sbjct 3491 TTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGATATT 3547 Query 42057 CGCAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAAT 42116 || || ||||| || || ||| || || || || | ||||| || | || Sbjct 3548 GTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTAT 3607 Query 42117 TGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAAATCC 42176 || || || || ||||| ||||||||||| | ||||| || | ||||| || Sbjct 3608 AGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCC 3667 Query 42177 GTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCAGGGGA 42236 |||||||||||||||||||| ||||| |||||| | ||||| | || || Sbjct 3668 ACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGA 3727 Query 42237 ATAATCAATATCATGGAAATGGATAATTCCGCTTTCATGTGCTTTCATAATAAAAGAC-- 42294 |||||| | |||||| |||| || || ||||||| || ||| | | | | | Sbjct 3728 ATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTCTT 3783 Query 42295 --GGGACCAT---ATTTTTGGCAATGTGCTTAGACACAATACCAGCCATAAGGTCCCGTT 42349 || | || |||||| ||| || ||||| | |||||||| | | || | || Sbjct 3784 TGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTTT 3843 Query 42350 GAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 42391 ||||||||| |||| ||||||||||||||| || |||| Sbjct 3844 GAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 >seq2698 Length=11445 Score = 105 bits (116), Expect = 7e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 59829 ATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACTGCATAACCGGATACA 59888 ||||| || | || ||||| || || | ||||||||| | ||| ||||| || || || Sbjct 5478 ATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAACAGCATATCCTGAAACC 5419 Query 59889 CGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCTTCCAGAGTTTCACGA 59948 | || || | |||||| |||||||| ||||| | |||||||| || ||||| Sbjct 5418 CTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATCAAGAAGTGTTTCTTTT 5359 Query 59949 CGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAATTTTAACCGTAGGTTGTGTTTCA 60008 || ||||||||||| || | ||||| |||||||||| | | || ||||| | |||| Sbjct 5358 CGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAACTCTTACAGTAGGACTTTCTTCA 5299 Query 60009 ATT 60011 ||| Sbjct 5298 ATT 5296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530606784917160