Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_015457.1
Length=165919
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 116 4e-21
seq2698 105 7e-18
>seq2789
Length=15484
Score = 116 bits (128), Expect = 4e-21
Identities = 490/762 (64%), Gaps = 19/762 (2%)
Strand=Plus/Plus
Query 41641 ATGTCAGGATACATTCTTTTGCTTGCGCATTCTAAAGCAAGCTGCTTAATATCATAGTTC 41700
|| ||||||||||||| || ||| ||||| | || || || || |||||||| ||
Sbjct 3132 ATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTA 3191
Query 41701 GGATCGTCTTTATAAAGATTAACACCTTCTTCAACGAACATAACAAGTTTAGGGAAAATA 41760
|||||| ||| ||| ||||||| | | | ||||||||| || || |
Sbjct 3192 GGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACT 3251
Query 41761 GGAGTTATCCCGTCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATC 41820
| ||| | | || | || || || | ||| | | |||| ||| |||||
Sbjct 3252 GCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATT 3311
Query 41821 ATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGCCC 41879
| || ||| | || | | | || ||||| || || ||||| || ||||| ||
Sbjct 3312 AATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTCC 3370
Query 41880 GTTTGAACTAAAAAGAGTATTTACTTCATATTCATAAGCTTGAAATGCATCGTATACGTC 41939
|||| || | |||||| | ||||||||| | ||||||| ||||| | ||
Sbjct 3371 ATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAACATTC 3430
Query 41940 TTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCATC 41999
|||||| |||| | | |||| || | || | ||| | ||||||||| ||
Sbjct 3431 TTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTC 3490
Query 42000 TTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTACATT 42056
|| ||| ||| | || || |||| ||||||| | ||| || | ||| | |||
Sbjct 3491 TTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGATATT 3547
Query 42057 CGCAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAAT 42116
|| || ||||| || || ||| || || || || | ||||| || | ||
Sbjct 3548 GTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTAT 3607
Query 42117 TGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAAATCC 42176
|| || || || ||||| ||||||||||| | ||||| || | ||||| ||
Sbjct 3608 AGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCC 3667
Query 42177 GTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCAGGGGA 42236
|||||||||||||||||||| ||||| |||||| | ||||| | || ||
Sbjct 3668 ACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGA 3727
Query 42237 ATAATCAATATCATGGAAATGGATAATTCCGCTTTCATGTGCTTTCATAATAAAAGAC-- 42294
|||||| | |||||| |||| || || ||||||| || ||| | | | | |
Sbjct 3728 ATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTCTT 3783
Query 42295 --GGGACCAT---ATTTTTGGCAATGTGCTTAGACACAATACCAGCCATAAGGTCCCGTT 42349
|| | || |||||| ||| || ||||| | |||||||| | | || | ||
Sbjct 3784 TGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTTT 3843
Query 42350 GAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 42391
||||||||| |||| ||||||||||||||| || ||||
Sbjct 3844 GAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
>seq2698
Length=11445
Score = 105 bits (116), Expect = 7e-18
Identities = 133/183 (73%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 59829 ATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACTGCATAACCGGATACA 59888
||||| || | || ||||| || || | ||||||||| | ||| ||||| || || ||
Sbjct 5478 ATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAACAGCATATCCTGAAACC 5419
Query 59889 CGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCTTCCAGAGTTTCACGA 59948
| || || | |||||| |||||||| ||||| | |||||||| || |||||
Sbjct 5418 CTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATCAAGAAGTGTTTCTTTT 5359
Query 59949 CGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAATTTTAACCGTAGGTTGTGTTTCA 60008
|| ||||||||||| || | ||||| |||||||||| | | || ||||| | ||||
Sbjct 5358 CGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAACTCTTACAGTAGGACTTTCTTCA 5299
Query 60009 ATT 60011
|||
Sbjct 5298 ATT 5296
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 530606784917160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |