Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq12187 286 4e-72 seq2021 277 2e-69 seq4853 230 3e-55 >seq12187 Length=3570 Score = 286 bits (316), Expect = 4e-72 Identities = 504/730 (69%), Gaps = 16/730 (2%) Strand=Plus/Minus Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 || ||||| | |||| | ||| || ||||| | |||||| ||| | | ||| Sbjct 1737 CCCAATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAA 1678 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||| || || | || ||||| || ||||| || ||||| ||||||||||| ||||| Sbjct 1677 TTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACA 1618 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAG---ATGTTTA 18951 ||||| |||| || | ||| | | ||| | ||| | | | |||||| Sbjct 1617 GCCTCACATATGAT---TTCAAGTATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTG 1561 Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 ||||||||||| ||||| |||||||| | || ||||| | |||| ||||| || Sbjct 1560 AACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAG 1501 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 ||||| | |||||||| || || | ||| || | |||||| ||||| || || ||| Sbjct 1500 AATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCA 1441 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131 ||||| ||||| || || |||||||| || | | | || ||| || | || | Sbjct 1440 CTGAAGAAAATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCG-A 1382 Query 19132 TTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 || |||| ||||| || ||||||||||||||||| || ||| |||| || || Sbjct 1381 TTTCGATGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTC 1322 Query 19191 TATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA 19250 || | ||||||||| | ||| | | ||| || || |||| | | ||||| | Sbjct 1321 AATGGCGTTAAATAGAAAATCACGTTGTTTTGTGTC----ACGTATGTAGGTGTCAATCA 1266 Query 19251 A----CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATC 19306 | ||||||||||| || || | |||||| || || || || || || |||||||| | Sbjct 1265 AAATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAAC 1206 Query 19307 TTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTC 19366 || || ||||| |||||||| | || | || |||||||||||||| || || | Sbjct 1205 GCGCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGC 1146 Query 19367 CATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA 19426 ||||| || || |||||||| || ||||| |||||||| | |||| || | Sbjct 1145 CATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCA 1086 Query 19427 ATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486 || | | ||| ||||| ||||| || ||||||| ||||| || ||||||||||| |||| Sbjct 1085 ATTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAG 1026 Query 19487 CCTCTGCTTT 19496 | || || || Sbjct 1025 CTTCGGCCTT 1016 >seq2021 Length=2943 Score = 277 bits (306), Expect = 2e-69 Identities = 914/1429 (64%), Gaps = 41/1429 (3%) Strand=Plus/Minus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 ||||||||||| | || | ||| |||| || || || |||||||||||||| ||| Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 || || ||| |||| || |||||||| || || | |||| |||| | || || Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 | | ||| || |||| |||||||| ||||| ||||| ||||| | |||||||||||| Sbjct 2029 GCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCAT- 1971 Query 47157 TCTAAAATAACCCTT-TGTGGTATCTCCCATACTGTTTTATA-AATTTGTTTA-ATGTCT 47213 | ||| | | ||| | |||||||| ||||| || || || | | ||| || Sbjct 1970 TTTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATG-CT 1912 Query 47214 TCTGGGA---GATTAGTATTTTGAATAGATCCTCCgttttctataattttgttttttaat 47270 | || | | | | ||||||| || ||||| | | |||||| | ||||| | Sbjct 1911 GC-GGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATA 1853 Query 47271 tcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGA 47330 |||| ||| || | | || || || || | |||| |||| || | || Sbjct 1852 TCATCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGG 1793 Query 47331 AATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCA 47390 ||||| ||||| | ||| | ||| |||| |||||| ||||| || || | ||||||| Sbjct 1792 AATTCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCA 1733 Query 47391 TTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTT 47450 ||||| || | ||||| ||||| || || |||||||| | ||||| | || ||| Sbjct 1732 TTATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTA 1673 Query 47451 CTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGA 47510 | || |||| ||| || | ||||| ||| ||||| | || Sbjct 1672 CGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGT 1613 Query 47511 ACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTT 47570 | ||| | |||||| || | |||||| || || | || || || ||| ||| Sbjct 1612 GTTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTT 1553 Query 47571 TTATAAG---GACCGTAT-AGTTT-------------------AGCGAGTTCACAACTTG 47607 | |||| | ||| || ||||| ||| | ||||| || | Sbjct 1552 TCATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGG 1493 Query 47608 CTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTG 47667 ||||||| |||| |||||| || ||||||||||||| | ||||| || |||||| Sbjct 1492 CTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCT 1433 Query 47668 ATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATAC 47727 |||| | ||||| |||| |||||| |||||||| || ||||||| Sbjct 1432 CACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATAC 1373 Query 47728 CAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATAT 47787 | || || | |||| |||| ||| || || || || | || || | || || | Sbjct 1372 CTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGT 1313 Query 47788 CTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAAT 47847 |||| ||||| || | | ||| |||| | | ||| ||||||| Sbjct 1312 CTATGATTTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAAT 1253 Query 47848 CAAA---CTTGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAG 47904 || | ||||| | |||||| |||| ||||| || || |||| |||||| |||| Sbjct 1252 CATAAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAG 1193 Query 47905 CTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAG 47964 | | |||| || | ||||| || ||||||| |||| ||| | || ||||||| Sbjct 1192 CAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAG 1133 Query 47965 TACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTG 48024 | || | ||| || |||||| | ||||| || ||||| || |||||| | || | Sbjct 1132 TGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAG 1073 Query 48025 TTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAG 48084 | |||||||| | ||||| || || || | ||| | || ||| | |||||| Sbjct 1072 TGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGC---TTTAACAG 1016 Query 48085 CTC---TAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCAT 48141 | | || | ||| | || ||||| ||| | | ||| ||||| || || Sbjct 1015 TGCGATTGGCACGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCC 956 Query 48142 ACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTT 48201 | || | || || || || || | | || ||||| | ||||||||| |||| | Sbjct 955 AAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCT 896 Query 48202 TTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTA 48261 || | |||| |||| || |||||||| ||||| ||||||||| | | | Sbjct 895 CCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGAT 836 Query 48262 GTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATG 48321 ||||| |||||| |||| | || | || | ||| || | |||||| | ||||| | Sbjct 835 ACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGG 776 Query 48322 GTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370 |||||||||| || || | | ||||| ||||| ||||| ||||| Sbjct 775 GTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATC 727 >seq4853 Length=2014 Score = 230 bits (254), Expect = 3e-55 Identities = 846/1329 (64%), Gaps = 21/1329 (2%) Strand=Plus/Plus Query 47519 CCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGG 47578 ||| | |||||| || | |||||| || || | || || || ||| |||| ||| || Sbjct 131 CCACATATCATACTGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAAGTTTCATAGGG 190 Query 47579 ACCGTATAGTTT---AGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTC 47635 ||| || || ||| | ||||| || |||||||| |||| |||||| || ||||| Sbjct 191 ACCC---AGCTTCTCAGCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTC 247 Query 47636 AAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNN 47695 |||||||| | ||||| || |||||| |||| | ||||| Sbjct 248 AAATATTTGTTGATTTAGCTTAAATGCTTCCTCACTTTCATATGGATAACGCATGAGTAT 307 Query 47696 NAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAA 47755 |||| |||||| |||||||| || |||||||| || || | |||| |||| ||| Sbjct 308 CAATGCATCTGCGAATCCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACG 367 Query 47756 CTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNN 47815 || || || || | || || | || || ||||| ||||| || | | Sbjct 368 CTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTAC 427 Query 47816 NNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA---CTTGTTATTTATAACAAACCT 47872 ||| |||| | | ||| ||||||||| | ||||| | |||||| | Sbjct 428 AATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACAT 487 Query 47873 ATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTAT 47932 ||| ||||| || || |||| |||||| ||||| | |||| || | ||||| || Sbjct 488 ATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTAC 547 Query 47933 TATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTT 47992 ||||||| |||| ||| | || |||||||| || | ||| || |||||| | Sbjct 548 AATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCG 607 Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052 ||||| || ||||| || |||||| | || || |||||||| | |||| || || || Sbjct 608 ATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAAT 667 Query 48053 AGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC---TAGCTTTATTATCATGTTCGTA 48109 | ||| | || ||| | |||||| | | || | ||| | || || Sbjct 668 GGCAAACCACAAGGTTTGAGC---TTTAACAGTGCGATTGGCACGACCTTCACGCTCATA 724 Query 48110 TTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATT 48169 ||| ||| | | ||| ||||| || || | || | || || || || || | | Sbjct 725 TTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTG 784 Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229 || ||||| | ||||||||| |||| | || | |||| || | || ||||| Sbjct 785 TGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTAT 844 Query 48230 CCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288 ||| ||||| ||| |||||||| | | | ||||| |||||| |||| | || | Sbjct 845 CCACAGAGC-ATAGAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCA 903 Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348 || | ||| || | |||||| | ||||| ||||| ||||| || || | |||||| Sbjct 904 AATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTG 963 Query 48349 GTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTG 48408 | ||||| ||||| ||||| | || | || || || | || | | ||| | Sbjct 964 GACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAG 1023 Query 48409 GGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT-- 48466 | || | |||||| || | ||||| || || | ||| | || | || | ||| Sbjct 1024 GCACTAAACCATTAGAGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGCGCGTATGC 1083 Query 48467 ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAG 48526 | | | ||| | || || || ||||| || || || | || || | | | Sbjct 1084 AATGCACATT--CAGGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCTAC 1141 Query 48527 GGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACAT 48586 || | |||| || || || ||| | | |||| | | || ||||| |||| Sbjct 1142 GGACTTGAAAATACCCTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAG 1201 Query 48587 TTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTC 48646 ||| || | | || ||| | |||| || ||||| || ||| |||| | ||| Sbjct 1202 TTGTGGGCGTCTTGTGGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCGCTC 1261 Query 48647 TGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGA 48706 ||||| || || || ||||| || | | ||| |||||| ||||| || | || Sbjct 1262 TGATAGTAAATTGTAGGTTTCTATGGCCGCATCGATATCCTCGCCGTGTATGCCCACAGC 1321 Query 48707 TACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATA 48766 |||||||| | | || |||||| | || ||||||| ||| |||||||| | ||| Sbjct 1322 CACACGCATCAGTAGATGTTGAGGACGCTCGACAATTTCCCCATTGATTTTCAATAAATA 1381 Query 48767 TGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || ||| | ||| || || || || || || || ||||||| ||||| |||||| Sbjct 1382 GGAACGTTCGAGTGTCTTGAATCCGAAGTAATTATAGCCAAAGTCGCGATCATAAATAAT 1441 Query 48827 TGATGAATT 48835 | ||||| Sbjct 1442 GGCGGAATT 1450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561890638548360