Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 286 4e-72
seq2021 277 2e-69
seq4853 230 3e-55
>seq12187
Length=3570
Score = 286 bits (316), Expect = 4e-72
Identities = 504/730 (69%), Gaps = 16/730 (2%)
Strand=Plus/Minus
Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834
|| ||||| | |||| | ||| || ||||| | |||||| ||| | | |||
Sbjct 1737 CCCAATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAA 1678
Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894
||||| || || | || ||||| || ||||| || ||||| ||||||||||| |||||
Sbjct 1677 TTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACA 1618
Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAG---ATGTTTA 18951
||||| |||| || | ||| | | ||| | ||| | | | ||||||
Sbjct 1617 GCCTCACATATGAT---TTCAAGTATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTG 1561
Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011
||||||||||| ||||| |||||||| | || ||||| | |||| ||||| ||
Sbjct 1560 AACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAG 1501
Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071
||||| | |||||||| || || | ||| || | |||||| ||||| || || |||
Sbjct 1500 AATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCA 1441
Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCA 19131
||||| ||||| || || |||||||| || | | | || ||| || | || |
Sbjct 1440 CTGAAGAAAATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCG-A 1382
Query 19132 TTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190
|| |||| ||||| || ||||||||||||||||| || ||| |||| || ||
Sbjct 1381 TTTCGATGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTC 1322
Query 19191 TATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAA 19250
|| | ||||||||| | ||| | | ||| || || |||| | | ||||| |
Sbjct 1321 AATGGCGTTAAATAGAAAATCACGTTGTTTTGTGTC----ACGTATGTAGGTGTCAATCA 1266
Query 19251 A----CTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATC 19306
| ||||||||||| || || | |||||| || || || || || || |||||||| |
Sbjct 1265 AAATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAAC 1206
Query 19307 TTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTC 19366
|| || ||||| |||||||| | || | || |||||||||||||| || || |
Sbjct 1205 GCGCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGC 1146
Query 19367 CATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA 19426
||||| || || |||||||| || ||||| |||||||| | |||| || |
Sbjct 1145 CATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCA 1086
Query 19427 ATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAG 19486
|| | | ||| ||||| ||||| || ||||||| ||||| || ||||||||||| ||||
Sbjct 1085 ATTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAG 1026
Query 19487 CCTCTGCTTT 19496
| || || ||
Sbjct 1025 CTTCGGCCTT 1016
>seq2021
Length=2943
Score = 277 bits (306), Expect = 2e-69
Identities = 914/1429 (64%), Gaps = 41/1429 (3%)
Strand=Plus/Minus
Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036
||||||||||| | || | ||| |||| || || || |||||||||||||| |||
Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090
Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096
|| || ||| |||| || |||||||| || || | |||| |||| | || ||
Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030
Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156
| | ||| || |||| |||||||| ||||| ||||| ||||| | ||||||||||||
Sbjct 2029 GCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCAT- 1971
Query 47157 TCTAAAATAACCCTT-TGTGGTATCTCCCATACTGTTTTATA-AATTTGTTTA-ATGTCT 47213
| ||| | | ||| | |||||||| ||||| || || || | | ||| ||
Sbjct 1970 TTTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATG-CT 1912
Query 47214 TCTGGGA---GATTAGTATTTTGAATAGATCCTCCgttttctataattttgttttttaat 47270
| || | | | | ||||||| || ||||| | | |||||| | ||||| |
Sbjct 1911 GC-GGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATA 1853
Query 47271 tcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTGA 47330
|||| ||| || | | || || || || | |||| |||| || | ||
Sbjct 1852 TCATCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGG 1793
Query 47331 AATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTCA 47390
||||| ||||| | ||| | ||| |||| |||||| ||||| || || | |||||||
Sbjct 1792 AATTCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCA 1733
Query 47391 TTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTT 47450
||||| || | ||||| ||||| || || |||||||| | ||||| | || |||
Sbjct 1732 TTATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTA 1673
Query 47451 CTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGA 47510
| || |||| ||| || | ||||| ||| ||||| | ||
Sbjct 1672 CGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGT 1613
Query 47511 ACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTT 47570
| ||| | |||||| || | |||||| || || | || || || ||| |||
Sbjct 1612 GTTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTT 1553
Query 47571 TTATAAG---GACCGTAT-AGTTT-------------------AGCGAGTTCACAACTTG 47607
| |||| | ||| || ||||| ||| | ||||| || |
Sbjct 1552 TCATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGG 1493
Query 47608 CTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTG 47667
||||||| |||| |||||| || ||||||||||||| | ||||| || ||||||
Sbjct 1492 CTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCT 1433
Query 47668 ATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATAC 47727
|||| | ||||| |||| |||||| |||||||| || |||||||
Sbjct 1432 CACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATAC 1373
Query 47728 CAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATAT 47787
| || || | |||| |||| ||| || || || || | || || | || || |
Sbjct 1372 CTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGT 1313
Query 47788 CTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAAT 47847
|||| ||||| || | | ||| |||| | | ||| |||||||
Sbjct 1312 CTATGATTTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAAT 1253
Query 47848 CAAA---CTTGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAG 47904
|| | ||||| | |||||| |||| ||||| || || |||| |||||| ||||
Sbjct 1252 CATAAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAG 1193
Query 47905 CTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAG 47964
| | |||| || | ||||| || ||||||| |||| ||| | || |||||||
Sbjct 1192 CAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAG 1133
Query 47965 TACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTG 48024
| || | ||| || |||||| | ||||| || ||||| || |||||| | || |
Sbjct 1132 TGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAG 1073
Query 48025 TTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAG 48084
| |||||||| | ||||| || || || | ||| | || ||| | ||||||
Sbjct 1072 TGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGC---TTTAACAG 1016
Query 48085 CTC---TAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCAT 48141
| | || | ||| | || ||||| ||| | | ||| ||||| || ||
Sbjct 1015 TGCGATTGGCACGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCC 956
Query 48142 ACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTT 48201
| || | || || || || || | | || ||||| | ||||||||| |||| |
Sbjct 955 AAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCT 896
Query 48202 TTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTA 48261
|| | |||| |||| || |||||||| ||||| ||||||||| | | |
Sbjct 895 CCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGAT 836
Query 48262 GTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATG 48321
||||| |||||| |||| | || | || | ||| || | |||||| | ||||| |
Sbjct 835 ACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGG 776
Query 48322 GTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATC 48370
|||||||||| || || | | ||||| ||||| ||||| |||||
Sbjct 775 GTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATC 727
>seq4853
Length=2014
Score = 230 bits (254), Expect = 3e-55
Identities = 846/1329 (64%), Gaps = 21/1329 (2%)
Strand=Plus/Plus
Query 47519 CCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGG 47578
||| | |||||| || | |||||| || || | || || || ||| |||| ||| ||
Sbjct 131 CCACATATCATACTGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAAGTTTCATAGGG 190
Query 47579 ACCGTATAGTTT---AGCGAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTC 47635
||| || || ||| | ||||| || |||||||| |||| |||||| || |||||
Sbjct 191 ACCC---AGCTTCTCAGCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTC 247
Query 47636 AAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNN 47695
|||||||| | ||||| || |||||| |||| | |||||
Sbjct 248 AAATATTTGTTGATTTAGCTTAAATGCTTCCTCACTTTCATATGGATAACGCATGAGTAT 307
Query 47696 NAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAA 47755
|||| |||||| |||||||| || |||||||| || || | |||| |||| |||
Sbjct 308 CAATGCATCTGCGAATCCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACG 367
Query 47756 CTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNN 47815
|| || || || | || || | || || ||||| ||||| || | |
Sbjct 368 CTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTAC 427
Query 47816 NNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA---CTTGTTATTTATAACAAACCT 47872
||| |||| | | ||| ||||||||| | ||||| | |||||| |
Sbjct 428 AATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACAT 487
Query 47873 ATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTAT 47932
||| ||||| || || |||| |||||| ||||| | |||| || | ||||| ||
Sbjct 488 ATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTAC 547
Query 47933 TATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTT 47992
||||||| |||| ||| | || |||||||| || | ||| || |||||| |
Sbjct 548 AATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCG 607
Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGAT 48052
||||| || ||||| || |||||| | || || |||||||| | |||| || || ||
Sbjct 608 ATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAAT 667
Query 48053 AGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC---TAGCTTTATTATCATGTTCGTA 48109
| ||| | || ||| | |||||| | | || | ||| | || ||
Sbjct 668 GGCAAACCACAAGGTTTGAGC---TTTAACAGTGCGATTGGCACGACCTTCACGCTCATA 724
Query 48110 TTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATT 48169
||| ||| | | ||| ||||| || || | || | || || || || || | |
Sbjct 725 TTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTG 784
Query 48170 AGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTAT 48229
|| ||||| | ||||||||| |||| | || | |||| || | || |||||
Sbjct 785 TGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTAT 844
Query 48230 CCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAA 48288
||| ||||| ||| |||||||| | | | ||||| |||||| |||| | || |
Sbjct 845 CCACAGAGC-ATAGAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCA 903
Query 48289 GTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTG 48348
|| | ||| || | |||||| | ||||| ||||| ||||| || || | ||||||
Sbjct 904 AATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTG 963
Query 48349 GTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTG 48408
| ||||| ||||| ||||| | || | || || || | || | | ||| |
Sbjct 964 GACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAG 1023
Query 48409 GGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT-- 48466
| || | |||||| || | ||||| || || | ||| | || | || | |||
Sbjct 1024 GCACTAAACCATTAGAGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGCGCGTATGC 1083
Query 48467 ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAG 48526
| | | ||| | || || || ||||| || || || | || || | | |
Sbjct 1084 AATGCACATT--CAGGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCTAC 1141
Query 48527 GGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACAT 48586
|| | |||| || || || ||| | | |||| | | || ||||| ||||
Sbjct 1142 GGACTTGAAAATACCCTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAG 1201
Query 48587 TTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTC 48646
||| || | | || ||| | |||| || ||||| || ||| |||| | |||
Sbjct 1202 TTGTGGGCGTCTTGTGGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCGCTC 1261
Query 48647 TGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGA 48706
||||| || || || ||||| || | | ||| |||||| ||||| || | ||
Sbjct 1262 TGATAGTAAATTGTAGGTTTCTATGGCCGCATCGATATCCTCGCCGTGTATGCCCACAGC 1321
Query 48707 TACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATA 48766
|||||||| | | || |||||| | || ||||||| ||| |||||||| | |||
Sbjct 1322 CACACGCATCAGTAGATGTTGAGGACGCTCGACAATTTCCCCATTGATTTTCAATAAATA 1381
Query 48767 TGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826
|| ||| | ||| || || || || || || || ||||||| ||||| ||||||
Sbjct 1382 GGAACGTTCGAGTGTCTTGAATCCGAAGTAATTATAGCCAAAGTCGCGATCATAAATAAT 1441
Query 48827 TGATGAATT 48835
| |||||
Sbjct 1442 GGCGGAATT 1450
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 561890638548360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |