Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1985 183 2e-40 seq1470 143 2e-28 seq13975 104 2e-16 >seq1985 Length=11301 Score = 183 bits (202), Expect = 2e-40 Identities = 373/546 (68%), Gaps = 30/546 (5%) Strand=Plus/Plus Query 549994 TATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGT 550053 ||||||||||||||||||||| ||| || || ||| | | | |||| ||||||| Sbjct 1155 TATAGGTATAGATTTAGGAACAACAAATTCATGCGTTTCTATAATGGAAAACGGTAAAGC 1214 Query 550054 TGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGA 550113 || |||||| |||| | ||||||| ||||| ||||| ||| |||| ||| | || Sbjct 1215 AAAAGTTATTGAGAATGTTGAAGGTAAAAGAACAACTCCGTCTGTTGTTGCTTATGCTGA 1274 Query 550114 AACTG---AACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 | || || |||||||||||| | || ||| |||||| ||| ||| || Sbjct 1275 TAATGGTGAAATTTTAGTTGGTGAAACTGCTAAACGTCAAGCAGTAACTAACTCTAAAAA 1334 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 |||||| | | ||||||||||||||| |||| || |||| || | || | Sbjct 1335 TACTATAAGCGGCGTTAAACGTTTAATTGGTAGAAAATTCTCTGAT--GA---TGAAGTC 1389 Query 550231 AGATATGAAG---CATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGA 550287 | | | || || | || |||| ||| | |||||||| | ||| || Sbjct 1390 AAAAAAGATCTTTCAATTGC---TCCAT-TTGACATTGTTTCTG------CGGATAATGG 1439 Query 550288 AGCTACTCATGAAGGATCTGTTAAAC--AAT----TTTCACCAGAACAAATTTCATCTAT 550341 | || |||| | ||||||||| || |||| ||| |||||||||| || Sbjct 1440 TG--ACGCATGG-GTTTCTGTTAAAGGTAAGAGCCTTTCCCCACAACAAATTTCTGCTGA 1496 Query 550342 GGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGC 550401 ||||||| ||||||||| || | || | || | | || | ||||||| || || Sbjct 1497 AATTTTAATTAAAATGAAAAAAGCTGCGGAAGATTATTTAGGCGAGAAAGTTACAGACGC 1556 Query 550402 AGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGG 550461 || |||||||| ||||| |||||||| || | ||| | ||||| || ||||| ||||| Sbjct 1557 TGTTATAACTGTTCCAGCTTATTTTAACGATGCTCAAAGGCAAGCAACAAAAGACGCTGG 1616 Query 550462 ACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGC 550521 ||||| || |||||||| | | ||||| |||||||| ||||||||||||||||| Sbjct 1617 TAAAATTGCAGGTCTTAATGTGCAAAGAATTATAAATGAACCAACTGCTGCTGCACTTGC 1676 Query 550522 ATATGG 550527 || ||| Sbjct 1677 ATTTGG 1682 Score = 129 bits (142), Expect = 5e-24 Identities = 256/377 (68%), Gaps = 14/377 (4%) Strand=Plus/Plus Query 552208 TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGAC 552267 ||||||| ||||| || || | | ||||| ||||| |||| ||| | | Sbjct 2310 TTAATCCTGATGAAGCAGTGTCATTAGGTGCAGCAATACAAGG---------TTCAGTAT 2360 Query 552268 AAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTT 552327 ||| | ||||| | || || || | ||| | ||||| || ||| ||||| ||||| Sbjct 2361 TAACAGGTGAAACAA---AAGATCTTCTTCTTCTTGATGTAACACCTTTATCTATTGGTA 2417 Query 552328 TAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTA 552387 | |||||| | || ||| | |||||| |||||| || |||||| || ||||| | Sbjct 2418 TTGAAACAATGGGTGGTGTAATGACTGTTCTTATACCTAAAAATACGACAATTCCAAC-A 2476 Query 552388 AAAAATCT-CGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 | ||||| | || || |||||| | |||||||||| | | || |||| || | Sbjct 2477 AGAAATCAGCAAGTGTTCTCTACGGCTGATGATAATCAAAATTCAGTAGGAATTAAAGTA 2536 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 || |||| ||||||||| || |||||||| | ||| |||||||||||| Sbjct 2537 TTCCAAGGCGAAAGAAAACGTTCTTCTGATAATAAATTGTTAGGTGAATTTAATTTAGAA 2596 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 ||||| |||||||| || || ||| |||||||||||||| || ||||| || Sbjct 2597 GGTATAGACCCTGCTCCACGAGGGACACCTCAAATTGAAGTTACATTTGATATTGACCAG 2656 Query 552567 AATGGAATTTTGAATGT 552583 ||||| ||| | | ||| Sbjct 2657 AATGGTATTATCAGTGT 2673 >seq1470 Length=5781 Score = 143 bits (158), Expect = 2e-28 Identities = 336/499 (67%), Gaps = 15/499 (3%) Strand=Plus/Plus Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085 |||||||||||| | || || ||||||||||||||||| |||||||||||| | | Sbjct 2336 GTGTTGGTGTTTATAAGAACGGACGTGTTGAAATTATTGCCAACGATCAAGGTAACCGTA 2395 Query 550086 CTACTCCATCTTATGTTTCTTTCACG---GAAACTGAACATTTAGTTGGTGATGCAGCAA 550142 ||||| || |||||| |||||| ||| ||||| ||| |||||||||| || | Sbjct 2396 TCACTCCCTCATATGTTGGTTTCACAAGTGAAGGTGAACGTTTGATTGGTGATGCCGCCA 2455 Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 || |||| || ||||| ||||| | || ||||| || ||||| ||||| Sbjct 2456 AAAATCAGTTGACCACAAATCCAGAGAATACAGTATTCGATGCCAAGCGTTTGATTGGTC 2515 Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTT- 550261 | | |||||| | | ||| || || || || | || ||| ||| || | Sbjct 2516 GTGAATGGAATGATGCCAATGTGCAACATGACATCAAATTCTTCCCCTTC-AAAGTGATC 2574 Query 550262 -AATGTTTCTGGAAAACCTTATATTGAAGCT---ACTCATGAAGGATCTGTTAAACAATT 550317 || || || || | ||| ||| | ||| | | || | ||| || Sbjct 2575 GAAAAGAACTCCAAG-CCACACATTCAAGTTCAAACTTCTCAGGGTACC---AAAGTGTT 2630 Query 550318 TTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTT 550377 | |||| ||| |||| || | |||||||| |||||||| | || || || | Sbjct 2631 TGCACCTGAAGAAATCTCCGCCATGGTTTTGGGTAAAATGAAGGACACCGCTGAAGCCTA 2690 Query 550378 TGTTGGTCAAGAAGTT-ACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCAC 550436 |||| ||||||| | || |||| || | || ||||| || || ||||| || | | Sbjct 2691 C-TTGGGCAAGAAGGTCACCAATGCTGTGGTCACAGTACCCGCCTACTTTAACGATGCTC 2749 Query 550437 AACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCA 550496 |||||||||| || ||||| ||||| ||||||||| ||||||||| | ||||| || | Sbjct 2750 AACGTCAAGCCACCAAAGACGCTGGCGTTATTGCTGGTCTTAATGTTATGCGTATCATTA 2809 Query 550497 ATGAACCTACTGCTGCTGC 550515 |||| || || |||||||| Sbjct 2810 ATGAGCCCACCGCTGCTGC 2828 >seq13975 Length=1469 Score = 104 bits (114), Expect = 2e-16 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || ||||| ||||||||||| ||||||||||| | ||| |||| ||| Sbjct 1283 GCAATTGGAATTGATTTGGGAACCACATACTCCTGTGTTGGTGTCTTTCAACATGGAAAA 1342 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || ||||| |||||||| || ||||| || | || || || |||||| | ||||| Sbjct 1343 GTAGAAATAATTGCCAACGACCAAGGAAATCGTACAACACCCAGTTATGTGGCATTCACA 1402 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG 550151 || | || | ||| |||||||||| || ||| |||||| Sbjct 1403 GATTCAGAGCGTTTGATTGGTGATGCCGCCAAAAATCAAG 1442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027653988849010