Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq2410 132 9e-26 seq1262 86.0 1e-11 >seq2410 Length=3205 Score = 132 bits (146), Expect = 9e-26 Identities = 125/158 (79%), Gaps = 5/158 (3%) Strand=Plus/Minus Query 16040 TGGTGGCCCCGGCGTGACTTGAACACGCGACCAAGCGATTATGAGTCACCTGCTCTAACC 16099 |||||||||| || ||||||||| |||||| | |||||||||||| |||||||||| Sbjct 1026 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAACC 967 Query 16100 GTCTGAGCTACGGGGCCGGAATGGCGCGCCCTACAGGATTCGAACCTGTGACCAATAGCT 16159 |||||||| ||||| ||| ||| || ||||||||||||| ||||| | ||| Sbjct 966 AACTGAGCTAAGGGGC----GTGGTACGCTGTATAGGATTCGAACCTATGACCTACTGCT 911 Query 16160 TAGAAGGCTACTGCTCTATCC-ACTGAGCTAAGAGCGC 16196 |||||||| |||||||||| |||||||||| | ||| Sbjct 910 TAGAAGGCAGTTGCTCTATCCAACTGAGCTAACAACGC 873 >seq1262 Length=72559 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 16040 TGGTGGCCCCGGCGTGACTTGAACACGCGACCAAGCGATTATGAGTCACCTGCTCTAACC 16099 |||||||||| || ||||||||| |||||| | |||||||||||| |||||||||| Sbjct 63818 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACC 63877 Query 16100 GTCTGAGCTACGGGGCCGGAAT 16121 |||||||| ||||||| ||| Sbjct 63878 AACTGAGCTAAGGGGCCGTAAT 63899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910740792874680