Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_016761.1
Length=38684
Score E
Sequences producing significant alignments: (Bits) Value
seq9716 134 3e-27
seq15839 129 1e-25
seq4088 116 9e-22
seq17421 93.3 1e-14
>seq9716
Length=2276
Score = 134 bits (148), Expect = 3e-27
Identities = 170/232 (73%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 1743 TTTATCGATTACGGGTACGGGACCGGGCTCAAATCAGTTGGCGATAACTGGGGCCGTAAC 1802
|| |||||||||||||| || ||||| || || ||||| ||||||||||||||||| |||
Sbjct 726 TTCATCGATTACGGGTATGGCACCGGCCTGAAGTCAGTAGGCGATAACTGGGGCCGAAAC 785
Query 1803 TGGACCCTGATTCAGTTCGGCAGCGGTACGGCAGATCCCGAGATGGGCAATAAACGCGGT 1862
||| ||||| |||||||| ||||| | | ||||| |||||| || || || ||
Sbjct 786 TGGCAGCTGATACAGTTCGGTAGCGGCTCTACCGATCCGCAGATGGCGAACAAGCGTGGC 845
Query 1863 GAGATGTACAA-----ATCAGCCCGCGATGCGCTGAAGCTTGGTGCACAACTCGACAGCC 1917
||||||||||| | || || || ||||||| ||| | || || || || |
Sbjct 846 GAGATGTACAACGCGGTTAAGACC----TG-GCTGAAGGATGGCGGGCAGCTGGATAGTC 900
Query 1918 AGGAACTTGCCGACGAACTGAGCGCACCTGAATACAAAGTCAGGCTGAAGGA 1969
|||| |||| || || ||| || | |||||||| ||| ||||||| ||
Sbjct 901 AGGATGTTGCAGATGAGCTGTCAGCGGCAGAATACAAGGTCCGGCTGAAAGA 952
Score = 113 bits (124), Expect = 1e-20
Identities = 103/130 (79%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1083 GCGATGTACAGCAACGATCCAGGTCACGACAAACGCTGGCGCGCTGACGCAATCCCGTGG 1142
|| || |||||||| ||| | | |||| || ||||||||||| || ||||| |||
Sbjct 3 GCCATTTACAGCAATGATGCCGCACACGCTAAGTCATGGCGCGCTGATGCCATCCCATGG 62
Query 1143 TCTGAGCACAATACCGAGGCCTTCGCAGGGCTGCACAACGAGCGTAAGCGCATTATCGTG 1202
|| ||| |||| |||||||| ||||| || |||||||||||||| |||||||| ||| ||
Sbjct 63 TCAGAGAACAACACCGAGGCGTTCGCCGGCCTGCACAACGAGCGAAAGCGCATCATCCTG 122
Query 1203 GTGTTCGACG 1212
| |||||||
Sbjct 123 ATATTCGACG 132
>seq15839
Length=1484
Score = 129 bits (142), Expect = 1e-25
Identities = 118/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 36148 CAGCACCTTGAGCTGCGTAAGCACGCAGGGGAAATCGCCTGGTACCGGTTCGAAGGTATC 36207
||||| ||||||||||| |||| ||||||||||||||||||||| |||||||| |
Sbjct 5 CAGCATCTTGAGCTGCGCAAGCGGGCAGGGGAAATCGCCTGGTACAAATTCGAAGGGCTG 64
Query 36208 AAGCTGCGCCTGGCTGATAACACGTTCTACACGCCGGACTTCGCAGTGATGCTAACCAGT 36267
|| ||||||||||| || ||||| ||||||| ||||| ||| || ||||| | |||
Sbjct 65 AAACTGCGCCTGGCGGACAACACCTTCTACAGCCCGGATTTCTTCGTAATGCTCAGCAGC 124
Query 36268 GGTGAGATGGAACTGCACGAGGTGAAAGG 36296
|||||| |||| ||||| || |||||
Sbjct 125 GGTGAGCTGGAGGCCCACGAAGTCAAAGG 153
>seq4088
Length=5036
Score = 116 bits (128), Expect = 9e-22
Identities = 103/129 (80%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 2887 CACAACGCTGAGAGCACTGCCGGTGTCCGAATCGAACTGACCATTTCCTTGCCCAACCCT 2946
||||| | || |||||| ||||||| ||||| |||| ||| ||||| | ||||||||
Sbjct 1686 CACAATGAAGAAAGCACTACCGGTGTTCGAATTGAACGAACCTTTTCCCTACCCAACCCC 1627
Query 2947 CCCAACTGAATGGGACTGTCTGGAATTGAACCAGCACTTATGCCTTGCTCGTCAATGCTC 3006
| | |||| | || |||||||||||||||||| |||||||||| |||| |||||||
Sbjct 1626 TCGCATTGAAGCGAGCTATCTGGAATTGAACCAGCATTTATGCCTTGATCGTTAATGCTC 1567
Query 3007 TCATCGTTG 3015
|| ||||||
Sbjct 1566 TCTTCGTTG 1558
Score = 98.7 bits (108), Expect = 2e-16
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2810 TTCTGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTA 2869
|| ||||||| | ||| ||| ||||||| ||| || ||||||||||||||||||||||||
Sbjct 4327 TTTTGGTGCGCCGTGCTGGACTCGAACCAGCGACCTACCGCTTAGAAGGCGGTTGCTCTA 4268
Query 2870 TCCAACTGAGCTAA 2883
||||||||||||||
Sbjct 4267 TCCAACTGAGCTAA 4254
Score = 84.2 bits (92), Expect = 5e-12
Identities = 63/74 (85%), Gaps = 4/74 (5%)
Strand=Plus/Minus
Query 2810 TTCTGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTA 2869
|||||||||| | ||| ||| ||||||| |||||| |||||||||||||||||||
Sbjct 2321 TTCTGGTGCGCCGTGCTGGACTCGAACCAGCGGCCTACCGCTTAGAAGGCGGTTG----N 2266
Query 2870 TCCAACTGAGCTAA 2883
||||||||||||||
Sbjct 2265 TCCAACTGAGCTAA 2252
>seq17421
Length=2767
Score = 93.3 bits (102), Expect = 1e-14
Identities = 63/71 (89%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872
|||| || | ||| ||||| ||||| ||| || |||||||||||||||||||||||||||
Sbjct 2547 TGGTACGCCGTGCTGGATTTGAACCAGCGACCTACCGCTTAGAAGGCGGTTGCTCTATCC 2606
Query 2873 AACTGAGCTAA 2883
|||||||||||
Sbjct 2607 AACTGAGCTAA 2617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 123621603053148
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |