Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_016761.1 Length=38684 Score E Sequences producing significant alignments: (Bits) Value seq9716 134 3e-27 seq15839 129 1e-25 seq4088 116 9e-22 seq17421 93.3 1e-14 >seq9716 Length=2276 Score = 134 bits (148), Expect = 3e-27 Identities = 170/232 (73%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 1743 TTTATCGATTACGGGTACGGGACCGGGCTCAAATCAGTTGGCGATAACTGGGGCCGTAAC 1802 || |||||||||||||| || ||||| || || ||||| ||||||||||||||||| ||| Sbjct 726 TTCATCGATTACGGGTATGGCACCGGCCTGAAGTCAGTAGGCGATAACTGGGGCCGAAAC 785 Query 1803 TGGACCCTGATTCAGTTCGGCAGCGGTACGGCAGATCCCGAGATGGGCAATAAACGCGGT 1862 ||| ||||| |||||||| ||||| | | ||||| |||||| || || || || Sbjct 786 TGGCAGCTGATACAGTTCGGTAGCGGCTCTACCGATCCGCAGATGGCGAACAAGCGTGGC 845 Query 1863 GAGATGTACAA-----ATCAGCCCGCGATGCGCTGAAGCTTGGTGCACAACTCGACAGCC 1917 ||||||||||| | || || || ||||||| ||| | || || || || | Sbjct 846 GAGATGTACAACGCGGTTAAGACC----TG-GCTGAAGGATGGCGGGCAGCTGGATAGTC 900 Query 1918 AGGAACTTGCCGACGAACTGAGCGCACCTGAATACAAAGTCAGGCTGAAGGA 1969 |||| |||| || || ||| || | |||||||| ||| ||||||| || Sbjct 901 AGGATGTTGCAGATGAGCTGTCAGCGGCAGAATACAAGGTCCGGCTGAAAGA 952 Score = 113 bits (124), Expect = 1e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1083 GCGATGTACAGCAACGATCCAGGTCACGACAAACGCTGGCGCGCTGACGCAATCCCGTGG 1142 || || |||||||| ||| | | |||| || ||||||||||| || ||||| ||| Sbjct 3 GCCATTTACAGCAATGATGCCGCACACGCTAAGTCATGGCGCGCTGATGCCATCCCATGG 62 Query 1143 TCTGAGCACAATACCGAGGCCTTCGCAGGGCTGCACAACGAGCGTAAGCGCATTATCGTG 1202 || ||| |||| |||||||| ||||| || |||||||||||||| |||||||| ||| || Sbjct 63 TCAGAGAACAACACCGAGGCGTTCGCCGGCCTGCACAACGAGCGAAAGCGCATCATCCTG 122 Query 1203 GTGTTCGACG 1212 | ||||||| Sbjct 123 ATATTCGACG 132 >seq15839 Length=1484 Score = 129 bits (142), Expect = 1e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 36148 CAGCACCTTGAGCTGCGTAAGCACGCAGGGGAAATCGCCTGGTACCGGTTCGAAGGTATC 36207 ||||| ||||||||||| |||| ||||||||||||||||||||| |||||||| | Sbjct 5 CAGCATCTTGAGCTGCGCAAGCGGGCAGGGGAAATCGCCTGGTACAAATTCGAAGGGCTG 64 Query 36208 AAGCTGCGCCTGGCTGATAACACGTTCTACACGCCGGACTTCGCAGTGATGCTAACCAGT 36267 || ||||||||||| || ||||| ||||||| ||||| ||| || ||||| | ||| Sbjct 65 AAACTGCGCCTGGCGGACAACACCTTCTACAGCCCGGATTTCTTCGTAATGCTCAGCAGC 124 Query 36268 GGTGAGATGGAACTGCACGAGGTGAAAGG 36296 |||||| |||| ||||| || ||||| Sbjct 125 GGTGAGCTGGAGGCCCACGAAGTCAAAGG 153 >seq4088 Length=5036 Score = 116 bits (128), Expect = 9e-22 Identities = 103/129 (80%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 2887 CACAACGCTGAGAGCACTGCCGGTGTCCGAATCGAACTGACCATTTCCTTGCCCAACCCT 2946 ||||| | || |||||| ||||||| ||||| |||| ||| ||||| | |||||||| Sbjct 1686 CACAATGAAGAAAGCACTACCGGTGTTCGAATTGAACGAACCTTTTCCCTACCCAACCCC 1627 Query 2947 CCCAACTGAATGGGACTGTCTGGAATTGAACCAGCACTTATGCCTTGCTCGTCAATGCTC 3006 | | |||| | || |||||||||||||||||| |||||||||| |||| ||||||| Sbjct 1626 TCGCATTGAAGCGAGCTATCTGGAATTGAACCAGCATTTATGCCTTGATCGTTAATGCTC 1567 Query 3007 TCATCGTTG 3015 || |||||| Sbjct 1566 TCTTCGTTG 1558 Score = 98.7 bits (108), Expect = 2e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2810 TTCTGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTA 2869 || ||||||| | ||| ||| ||||||| ||| || |||||||||||||||||||||||| Sbjct 4327 TTTTGGTGCGCCGTGCTGGACTCGAACCAGCGACCTACCGCTTAGAAGGCGGTTGCTCTA 4268 Query 2870 TCCAACTGAGCTAA 2883 |||||||||||||| Sbjct 4267 TCCAACTGAGCTAA 4254 Score = 84.2 bits (92), Expect = 5e-12 Identities = 63/74 (85%), Gaps = 4/74 (5%) Strand=Plus/Minus Query 2810 TTCTGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTA 2869 |||||||||| | ||| ||| ||||||| |||||| ||||||||||||||||||| Sbjct 2321 TTCTGGTGCGCCGTGCTGGACTCGAACCAGCGGCCTACCGCTTAGAAGGCGGTTG----N 2266 Query 2870 TCCAACTGAGCTAA 2883 |||||||||||||| Sbjct 2265 TCCAACTGAGCTAA 2252 >seq17421 Length=2767 Score = 93.3 bits (102), Expect = 1e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2813 TGGTGCGGCATGCAGGATTCGAACCTGCGGCCAACCGCTTAGAAGGCGGTTGCTCTATCC 2872 |||| || | ||| ||||| ||||| ||| || ||||||||||||||||||||||||||| Sbjct 2547 TGGTACGCCGTGCTGGATTTGAACCAGCGACCTACCGCTTAGAAGGCGGTTGCTCTATCC 2606 Query 2873 AACTGAGCTAA 2883 ||||||||||| Sbjct 2607 AACTGAGCTAA 2617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123621603053148