Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq12187 228 1e-54 >seq12187 Length=3570 Score = 228 bits (252), Expect = 1e-54 Identities = 467/689 (68%), Gaps = 4/689 (1%) Strand=Plus/Minus Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 ||| || ||||| ||||| |||| | |||| |||| | || || ||||| || || || Sbjct 1717 ATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAGATTCAC 1658 Query 37070 TGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAAC 37129 || | ||||| ||||| || ||||||| ||||||| || | || | || Sbjct 1657 AGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGATTTCAAG 1598 Query 37130 AATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCACA 37189 || || | | || | |||| ||| |||| ||||| ||||| ||||| Sbjct 1597 TATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAGGCAAAGTCACA 1538 Query 37190 ATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACC 37249 ||| || ||||| || | |||| ||||| || || || | || ||||| | ||| Sbjct 1537 ATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGGCATGAGACC 1478 Query 37250 TCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGC 37309 | ||| |||| ||| || || | || ||| ||| ||||||||||| ||||| || Sbjct 1477 ACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACCCTCAACAGC 1418 Query 37310 TGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA-GAAATCCAtttttttG 37368 ||||||||||| || ||| ||| ||| ||| | || | || ||||| | | Sbjct 1417 TGCAAATGCTATAATACGCTCACCAAAA-TTGGCCGATTTCGATGAGATCCAGGCCATGG 1359 Query 37369 TCCAATCTGCCTTTAATTTAACA-CATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttt 37427 |||||| ||||| |||||| || || |||||||| || || || ||||| | Sbjct 1358 CCCAATCAGCCTTCTTCTTAACAGCAGGCAGC-GTTTCAATGGCGTTAAATAGAAAATCA 1300 Query 37428 ttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATA 37487 || || | || ||| || || ||||| | | || |||||||||||||| | | Sbjct 1299 CGTTGTTTTGTGTCACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGAGTGCACA 1240 Query 37488 TTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTA 37547 ||||| || || || || |||||||||||||| | || |||| || ||| || || | Sbjct 1239 TTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTACTTCTTGG 1180 Query 37548 AAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGA 37607 || | || | || |||||||| || || |||||| || || || || || | | Sbjct 1179 CTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAATGCCAAA 1120 Query 37608 ACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTT 37667 |||| ||||||||| || |||| || || ||||||| ||| ||||| ||||| || Sbjct 1119 ACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCATATCCTTG 1060 Query 37668 GATAAATCAACTTCATCAACGGTCCAAAA 37696 ||||||| ||||| || || |||||||| Sbjct 1059 CATAAATCCACTTCCTCCACTGTCCAAAA 1031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592086914445960