Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 228 1e-54
>seq12187
Length=3570
Score = 228 bits (252), Expect = 1e-54
Identities = 467/689 (68%), Gaps = 4/689 (1%)
Strand=Plus/Minus
Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069
||| || ||||| ||||| |||| | |||| |||| | || || ||||| || || ||
Sbjct 1717 ATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAGATTCAC 1658
Query 37070 TGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAAC 37129
|| | ||||| ||||| || ||||||| ||||||| || | || | ||
Sbjct 1657 AGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGATTTCAAG 1598
Query 37130 AATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCACA 37189
|| || | | || | |||| ||| |||| ||||| ||||| |||||
Sbjct 1597 TATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAGGCAAAGTCACA 1538
Query 37190 ATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACC 37249
||| || ||||| || | |||| ||||| || || || | || ||||| | |||
Sbjct 1537 ATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGGCATGAGACC 1478
Query 37250 TCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGC 37309
| ||| |||| ||| || || | || ||| ||| ||||||||||| ||||| ||
Sbjct 1477 ACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACCCTCAACAGC 1418
Query 37310 TGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA-GAAATCCAtttttttG 37368
||||||||||| || ||| ||| ||| ||| | || | || ||||| | |
Sbjct 1417 TGCAAATGCTATAATACGCTCACCAAAA-TTGGCCGATTTCGATGAGATCCAGGCCATGG 1359
Query 37369 TCCAATCTGCCTTTAATTTAACA-CATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttt 37427
|||||| ||||| |||||| || || |||||||| || || || ||||| |
Sbjct 1358 CCCAATCAGCCTTCTTCTTAACAGCAGGCAGC-GTTTCAATGGCGTTAAATAGAAAATCA 1300
Query 37428 ttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATA 37487
|| || | || ||| || || ||||| | | || |||||||||||||| | |
Sbjct 1299 CGTTGTTTTGTGTCACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGAGTGCACA 1240
Query 37488 TTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTA 37547
||||| || || || || |||||||||||||| | || |||| || ||| || || |
Sbjct 1239 TTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTACTTCTTGG 1180
Query 37548 AAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGA 37607
|| | || | || |||||||| || || |||||| || || || || || | |
Sbjct 1179 CTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAATGCCAAA 1120
Query 37608 ACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTT 37667
|||| ||||||||| || |||| || || ||||||| ||| ||||| ||||| ||
Sbjct 1119 ACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCATATCCTTG 1060
Query 37668 GATAAATCAACTTCATCAACGGTCCAAAA 37696
||||||| ||||| || || ||||||||
Sbjct 1059 CATAAATCCACTTCCTCCACTGTCCAAAA 1031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592086914445960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |