Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_018837.1 Length=122024 Score E Sequences producing significant alignments: (Bits) Value seq2305 84.2 2e-11 >seq2305 Length=5865 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/102 (79%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 32504 TGAGACTTGAACTCATAACCTATCGCTTAAGAGGCGAGTGCTCTAACCAGTTGAGCTAGC 32563 || ||||||||| || |||||||||||||| |||||||||||||||||| |||||||| Sbjct 5181 TGGGACTTGAACCCAAAACCTATCGCTTAAAAGGCGAGTGCTCTAACCA-TTGAGCTACG 5123 Query 32564 AAGC---AATTGTTTGGTAAAGAGTATAGGATTTTAACCTAT 32602 | | | || | |||| | |||||||||| ||||||| Sbjct 5122 GATCTATATTTTTCTGGTGCATTGTATAGGATTCGAACCTAT 5081 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/102 (79%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 32504 TGAGACTTGAACTCATAACCTATCGCTTAAGAGGCGAGTGCTCTAACCAGTTGAGCTAGC 32563 || ||||||||| || |||||||||||||| |||||||||||||||||| |||||||| Sbjct 5433 TGGGACTTGAACCCAAAACCTATCGCTTAAAAGGCGAGTGCTCTAACCA-TTGAGCTACG 5375 Query 32564 AAGC---AATTGTTTGGTAAAGAGTATAGGATTTTAACCTAT 32602 | | | || | |||| | |||||||||| ||||||| Sbjct 5374 GATCTATATTTTTCTGGTGCATTGTATAGGATTCGAACCTAT 5333 Score = 82.4 bits (90), Expect = 6e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 32504 TGAGACTTGAACTCATAACCTATCGCTTAAGAGGCGAGTGCTCTAACCAGTTGAGCTA 32561 || ||||||||| || |||||||||||||| |||||||||||||||||| |||||||| Sbjct 4197 TGGGACTTGAACCCAAAACCTATCGCTTAAAAGGCGAGTGCTCTAACCAATTGAGCTA 4140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 390204287021665