Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_018855.1
Length=169158
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 145 8e-30
>seq2789
Length=15484
Score = 145 bits (160), Expect = 8e-30
Identities = 509/779 (65%), Gaps = 23/779 (3%)
Strand=Plus/Minus
Query 59212 AACGAGAATGCTAATAAAGATTCTCGTGTTTTTCCAACTCAACGGGACCTTATGGCTGGT 59271
|| || ||||||||||||||| |||| ||||||||||| | || | | ||||||
Sbjct 3883 AATGAAAATGCTAATAAAGATAGCAATGTTATTCCAACTCAAAGAGATTTGTTAGCTGGT 3824
Query 59272 ATTGTGTCTAAGCACATTGCCAAAAAT---ATGGTCCC----GTCTTTTATTATGAAAGC 59324
|| | ||||| || ||| |||||| || | || | | | | | ||| ||
Sbjct 3823 ATAATTTCTAAACATTATGCTAAAAATCATATACTTCCCAAAGACGT--AGT-TGAC-GC 3768
Query 59325 ACATGAAAGCGGAATTATCCATTTCCATGATATTGATTATTCCCCTGCTCTTCCATTTAC 59384
||||||| || || |||| |||||| | |||||||| || | ||||| |
Sbjct 3767 TCATGAAAAAGGTGAAATTCATTATCATGATTTAGATTATTCACCATTTTTTCCAATGTT 3708
Query 59385 TAATTGCTGTTTAGTAGATTTAAAAGGAATGCTTGAAAACGGGTTTAAGCTAGGTAATGC 59444
|||||| ||||| ||||||||||||||||||||| || ||||| |||| |||||
Sbjct 3707 TAATTGTATGTTAGTTGATTTAAAAGGAATGCTTGAAGGTGGCTTTAAAATAGGAAATGC 3648
Query 59445 TCAAATTGAAACGCCTAAATCGATTGGTGTTGCTACTGCAATTATGGCACAAATTACCGC 59504
| |||||||||| || || ||||| || || || || | || ||||| | ||
Sbjct 3647 TGAAATTGAAACTCCACGTTCAATTGGAACAGCAACGGCTATAACTGCTCAAATAATAGC 3588
Query 59505 ACAGGTTGCTTCACATCAGTACGGCGGAACGACTTTTGCTAATGTAGATAAAGTACTTT- 59563
|| || || ||| || || ||||| || || ||| | ||| | || |||
Sbjct 3587 GCAAGTCGCAAGTCATACTTATGGTGGAACAACGATTAACAATATCGAT--ATTATTTTA 3530
Query 59564 -CTCCTTATGTTAAACGCACCT-ATGCAAAACATATTGAGGATGCAGAAAAATGGCAAAT 59621
| ||||||| |||| || || | ||| ||| | || ||||||||| | ||
Sbjct 3529 GCCCCTTATG-TAAAAGCTTCTGAAATAAAGTTAATTAAAGAAACAGAAAAATATAATAT 3471
Query 59622 CGCTGATGCGTTGAATTATGCCCAATCTAAAACAGAAAAAGACGTATACGATGCATTTCA 59681
| | || | || |||| | |||| |||||||| | ||||| |||||
Sbjct 3470 CCCCAATCCAGATAAATATGTTAATGAAAAAATTGAAAAAGAATGTTTTGATGCTTTTCA 3411
Query 59682 AGCTTATGAGTATGAAGTAAATACTCTTTTTAGCTCAAACGGTCAAACGCCTTTTGTAAC 59741
|| | || |||||| | |||||| | || | |||| || ||||| || ||||| ||
Sbjct 3410 AGGATTAGAATATGAAATTAATACTTTGCATACCGCAAATGGACAAACCCCATTTGTTAC 3351
Query 59742 AATTACATTTGGTACTGGAACTGACTGGA-CTGAACGAATTATTCAGAAAGCAATTCTTA 59800
|| ||||| ||| | | | || | ||| || | ||||| ||| |||| | |
Sbjct 3350 TTTTGGTTTTGG-ACTTGGAATTACAAAAGAGGAAAGATTAATTCAAAAATCAATATTAA 3292
Query 59801 AAAACCGCATTAAAGGCCTTGGTCGTGATGGAATAACTCCTATTTTCCCTAAACTTGTTA 59860
|||| | || || || | || || || ||| | | || || |||||||||
Sbjct 3291 GAAACAGAATAAATGGGTTAGGAAAAAATAAAAAAACGGCAGTATTTCCAAAACTTGTTT 3232
Query 59861 TGTTCATTGAAGAGGGTGTCAATCTTTATAAAGA-CGACCCGAACTATGATATTAAGCAG 59919
| ||| |||| || | ||| || || | ||| || || |||||||| || ||
Sbjct 3231 TTGCCATAAAAGAAGG-GACAAATAGAATTAATAGCGATCCTAATTATGATATAAAACAA 3173
Query 59920 CTTGCTCTAGAGTGTGCAAGCAAAAGAATGTATCCTGATATTATTTCAGTTAAGAACAA 59978
|| || || || ||| ||| || |||||||||||||||| ||| | ||| || |||
Sbjct 3172 CTGGCGCTTGAATGTTCAACACAACGAATGTATCCTGATAT--TTTAAATTATGAGCAA 3116
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 540967562208720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |