Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq2698 111 2e-19 seq1262 96.9 4e-15 seq2410 89.7 6e-13 >seq2698 Length=11445 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 50988 CCCACTGTTAAAGTGGAAGGTGGACAACACTTAAACGTAAACGTGTTGCGCCGCGAAACT 51047 || ||||| | ||| |||||||||||||| ||||| |||||||| | || ||||| Sbjct 5309 CCTACTGTAAGAGTTGAAGGTGGACAACATTTAAATGTAAACGTTCTTCGAAAAGAAACA 5368 Query 51048 CTGGAAGATGCTGTGAAGCATCCAGAAAAATACCCACAGTTAACGATCCGTGTGTCCGGC 51107 || ||||| || | ||||| ||||||||||| |||||||| || | || || || Sbjct 5369 CTTCTTGATGCAGTAGAACATCCTGAAAAATACCCGCAGTTAACAATTAGGGTTTCAGGA 5428 Query 51108 TATGCAGTGCGTTTCAATTCACTGACTCCTGAACAACAGCGCGACGTTATCGCCCGAACC 51167 ||||| || | || || || | || ||||||||||| | || ||||| || |||| Sbjct 5429 TATGCTGTTAGATTTAACTCTTTAACACCTGAACAACAACAAGATGTTATTACCAGAACT 5488 Query 51168 TTTACA 51173 || ||| Sbjct 5489 TTCACA 5494 >seq1262 Length=72559 Score = 96.9 bits (106), Expect = 4e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 49475 ATTCCGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGT 49534 ||| |||||| |||||| | ||||||||||| |||||||||||| ||| |||||| Sbjct 63899 ATTACGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGT 63840 Query 49535 TCAAGTCCAGCAGGGGCCACCAA 49557 ||||||||||||||||||||||| Sbjct 63839 TCAAGTCCAGCAGGGGCCACCAA 63817 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 93960 TTTAAAGCGTTCTTTTCCGGTTCCATTACATGAACTGCATTTCGGAGATCGGTCGCTATC 94019 |||| | ||||||||||| ||||||||||| ||||| ||||| || || || | || || Sbjct 20 TTTATATCGTTCTTTTCCAGTTCCATTACAAGAACTACATTTTGGTGAACGATGACTGTC 79 Query 94020 ATATCGCCCAGATCCATTACATGCAACACATTTCCGTAATTTCCAGCCATACACGAACCG 94079 ||| | ||||| || ||||| ||||||||||| | ||||| | ||||| | || Sbjct 80 ATACCTTCCAGAACCGTTACAAGCAACACATTTTCTCAATTTAAATCCATATTCAAATTT 139 Query 94080 CATATAATAATCGGTTCGTGCGGCCTTGCGTTCGTGGAAGTTCATACTTT 94129 | ||||| | |||| | | | || | ||| || || ||||| |||| Sbjct 140 AAAATAATGGTTCGTTCTTTCTTCTTTTCTTTCATGAAAATTCATGCTTT 189 >seq2410 Length=3205 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 49481 GCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCAAGT 49540 |||| |||||| | ||||||||||| |||||||||||| ||| |||||||||||| Sbjct 951 GCCCCTTAGCTCAGTTGGTTAGAGCAAACGACTCATAATCGTTAGGTCGCTGGTTCAAGT 1010 Query 49541 CCAGCAGGGGCCACCAA 49557 ||||||||||||||||| Sbjct 1011 CCAGCAGGGGCCACCAA 1027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569868341100120