Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_019398.1
Length=178193
Score E
Sequences producing significant alignments: (Bits) Value
seq2698 111 2e-19
seq1262 96.9 4e-15
seq2410 89.7 6e-13
>seq2698
Length=11445
Score = 111 bits (122), Expect = 2e-19
Identities = 136/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 50988 CCCACTGTTAAAGTGGAAGGTGGACAACACTTAAACGTAAACGTGTTGCGCCGCGAAACT 51047
|| ||||| | ||| |||||||||||||| ||||| |||||||| | || |||||
Sbjct 5309 CCTACTGTAAGAGTTGAAGGTGGACAACATTTAAATGTAAACGTTCTTCGAAAAGAAACA 5368
Query 51048 CTGGAAGATGCTGTGAAGCATCCAGAAAAATACCCACAGTTAACGATCCGTGTGTCCGGC 51107
|| ||||| || | ||||| ||||||||||| |||||||| || | || || ||
Sbjct 5369 CTTCTTGATGCAGTAGAACATCCTGAAAAATACCCGCAGTTAACAATTAGGGTTTCAGGA 5428
Query 51108 TATGCAGTGCGTTTCAATTCACTGACTCCTGAACAACAGCGCGACGTTATCGCCCGAACC 51167
||||| || | || || || | || ||||||||||| | || ||||| || ||||
Sbjct 5429 TATGCTGTTAGATTTAACTCTTTAACACCTGAACAACAACAAGATGTTATTACCAGAACT 5488
Query 51168 TTTACA 51173
|| |||
Sbjct 5489 TTCACA 5494
>seq1262
Length=72559
Score = 96.9 bits (106), Expect = 4e-15
Identities = 71/83 (86%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 49475 ATTCCGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGT 49534
||| |||||| |||||| | ||||||||||| |||||||||||| ||| ||||||
Sbjct 63899 ATTACGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGT 63840
Query 49535 TCAAGTCCAGCAGGGGCCACCAA 49557
|||||||||||||||||||||||
Sbjct 63839 TCAAGTCCAGCAGGGGCCACCAA 63817
Score = 95.1 bits (104), Expect = 1e-14
Identities = 123/170 (72%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 93960 TTTAAAGCGTTCTTTTCCGGTTCCATTACATGAACTGCATTTCGGAGATCGGTCGCTATC 94019
|||| | ||||||||||| ||||||||||| ||||| ||||| || || || | || ||
Sbjct 20 TTTATATCGTTCTTTTCCAGTTCCATTACAAGAACTACATTTTGGTGAACGATGACTGTC 79
Query 94020 ATATCGCCCAGATCCATTACATGCAACACATTTCCGTAATTTCCAGCCATACACGAACCG 94079
||| | ||||| || ||||| ||||||||||| | ||||| | ||||| | ||
Sbjct 80 ATACCTTCCAGAACCGTTACAAGCAACACATTTTCTCAATTTAAATCCATATTCAAATTT 139
Query 94080 CATATAATAATCGGTTCGTGCGGCCTTGCGTTCGTGGAAGTTCATACTTT 94129
| ||||| | |||| | | | || | ||| || || ||||| ||||
Sbjct 140 AAAATAATGGTTCGTTCTTTCTTCTTTTCTTTCATGAAAATTCATGCTTT 189
>seq2410
Length=3205
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 49481 GCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCAAGT 49540
|||| |||||| | ||||||||||| |||||||||||| ||| ||||||||||||
Sbjct 951 GCCCCTTAGCTCAGTTGGTTAGAGCAAACGACTCATAATCGTTAGGTCGCTGGTTCAAGT 1010
Query 49541 CCAGCAGGGGCCACCAA 49557
|||||||||||||||||
Sbjct 1011 CCAGCAGGGGCCACCAA 1027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569868341100120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |