Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_019399.1
Length=167396
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 129 6e-25
seq2410 84.2 2e-11
>seq2789
Length=15484
Score = 129 bits (142), Expect = 6e-25
Identities = 499/766 (65%), Gaps = 25/766 (3%)
Strand=Plus/Plus
Query 44392 AATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 44451
||||||||||||||| | || ||| ||| || || || || || || |||||||| ||
Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190
Query 44452 CGGATCGTCTTTGTAAAG--ATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAAA 44509
|||||| || | ||| ||| ||||||| | | | |||||| || || ||
Sbjct 3191 AGGATCG-CTAT-TAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAAT 3248
Query 44510 ATAGGAGTTATCCCATCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGA 44569
| | ||| | || || | || || || | ||| | | |||| ||| |||
Sbjct 3249 ACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGA 3308
Query 44570 ATCATTCGTTCAG-TCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGCGTTTG 44628
|| | || ||| | || | | | || ||||| || || ||||| || |||||
Sbjct 3309 ATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTG 3367
Query 44629 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATAC 44688
||| |||| || | |||||| | ||||||||| | |||| || ||||| | ||
Sbjct 3368 TCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-AC 3426
Query 44689 AT-CTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG 44747
|| ||||||| |||| | | |||| || | || | ||| | |||||||||
Sbjct 3427 ATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTG 3486
Query 44748 CATCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTA 44804
|| | ||| ||| | || || |||| ||||||| | ||| || | ||| |
Sbjct 3487 TTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGA 3543
Query 44805 CATTCGCAAAAGTCGTTCCGCCGTATTGGTGGGAAGCAACTTGCGCAGTAATTTGTGCCA 44864
||| || || ||||| || || || || |||||||| | ||||| ||
Sbjct 3544 TATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAG 3603
Query 44865 TAATTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAA 44924
| || || || || || ||||| ||||||||||| | ||||| || | ||||
Sbjct 3604 TTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAA 3663
Query 44925 ATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAACAATTAGTAAATGGAAGAGCAG 44984
| || |||||||||||||||||||| ||||| ||||||| | ||||| | |
Sbjct 3664 AGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATG 3723
Query 44985 GGGAATAATCAATATCGTGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAATAAAAG 45044
| |||||||| | ||| || |||| || || ||||||| || ||| | | | |
Sbjct 3724 GTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACG 3779
Query 45045 AC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCC 45097
| || | || |||||| ||| |||||||| | |||||||| | | ||
Sbjct 3780 TCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCT 3839
Query 45098 CGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 45143
| ||||||||||| |||| ||||||||||||||| || ||||
Sbjct 3840 CTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
>seq2410
Length=3205
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/152 (75%), Gaps = 8/152 (5%)
Strand=Plus/Minus
Query 68490 TTGGTGGCCCTGGGTGGAATTGAACCACC-ATCTGGCGATTATGAGTCGCTTGCTTGAAC 68548
|||||||||| | |||| |||||||| | | || ||||||||||||| ||||| |||
Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968
Query 68549 CTTC-CAGCTACAGGGCCTTGGT--GCTGATTGACGGAATCGAACCGCCGACCTTCTCAT 68605
| | ||||| |||| | |||| |||| | ||| ||||||| ||||| || |
Sbjct 967 CAACTGAGCTA-AGGGGCGTGGTACGCTG--TATAGGATTCGAACCTATGACCTACTGCT 911
Query 68606 TACAAGTGAGTTGCTCTA-CCTACTGAGCTAA 68636
|| ||| |||||||||| || ||||||||||
Sbjct 910 TAGAAGGCAGTTGCTCTATCCAACTGAGCTAA 879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 535331350542240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |