Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_019399.1 Length=167396 Score E Sequences producing significant alignments: (Bits) Value seq2789 129 6e-25 seq2410 84.2 2e-11 >seq2789 Length=15484 Score = 129 bits (142), Expect = 6e-25 Identities = 499/766 (65%), Gaps = 25/766 (3%) Strand=Plus/Plus Query 44392 AATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 44451 ||||||||||||||| | || ||| ||| || || || || || || |||||||| || Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 44452 CGGATCGTCTTTGTAAAG--ATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAAA 44509 |||||| || | ||| ||| ||||||| | | | |||||| || || || Sbjct 3191 AGGATCG-CTAT-TAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAAT 3248 Query 44510 ATAGGAGTTATCCCATCACGACCGAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGA 44569 | | ||| | || || | || || || | ||| | | |||| ||| ||| Sbjct 3249 ACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGA 3308 Query 44570 ATCATTCGTTCAG-TCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGCGTTTG 44628 || | || ||| | || | | | || ||||| || || ||||| || ||||| Sbjct 3309 ATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTG 3367 Query 44629 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATAC 44688 ||| |||| || | |||||| | ||||||||| | |||| || ||||| | || Sbjct 3368 TCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-AC 3426 Query 44689 AT-CTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTG 44747 || ||||||| |||| | | |||| || | || | ||| | ||||||||| Sbjct 3427 ATTCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTG 3486 Query 44748 CATCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTA 44804 || | ||| ||| | || || |||| ||||||| | ||| || | ||| | Sbjct 3487 TTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGA 3543 Query 44805 CATTCGCAAAAGTCGTTCCGCCGTATTGGTGGGAAGCAACTTGCGCAGTAATTTGTGCCA 44864 ||| || || ||||| || || || || |||||||| | ||||| || Sbjct 3544 TATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAG 3603 Query 44865 TAATTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGCTTAA 44924 | || || || || || ||||| ||||||||||| | ||||| || | |||| Sbjct 3604 TTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAA 3663 Query 44925 ATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAACAATTAGTAAATGGAAGAGCAG 44984 | || |||||||||||||||||||| ||||| ||||||| | ||||| | | Sbjct 3664 AGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATG 3723 Query 44985 GGGAATAATCAATATCGTGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAATAAAAG 45044 | |||||||| | ||| || |||| || || ||||||| || ||| | | | | Sbjct 3724 GTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACG 3779 Query 45045 AC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCC 45097 | || | || |||||| ||| |||||||| | |||||||| | | || Sbjct 3780 TCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCT 3839 Query 45098 CGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 45143 | ||||||||||| |||| ||||||||||||||| || |||| Sbjct 3840 CTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 >seq2410 Length=3205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/152 (75%), Gaps = 8/152 (5%) Strand=Plus/Minus Query 68490 TTGGTGGCCCTGGGTGGAATTGAACCACC-ATCTGGCGATTATGAGTCGCTTGCTTGAAC 68548 |||||||||| | |||| |||||||| | | || ||||||||||||| ||||| ||| Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968 Query 68549 CTTC-CAGCTACAGGGCCTTGGT--GCTGATTGACGGAATCGAACCGCCGACCTTCTCAT 68605 | | ||||| |||| | |||| |||| | ||| ||||||| ||||| || | Sbjct 967 CAACTGAGCTA-AGGGGCGTGGTACGCTG--TATAGGATTCGAACCTATGACCTACTGCT 911 Query 68606 TACAAGTGAGTTGCTCTA-CCTACTGAGCTAA 68636 || ||| |||||||||| || |||||||||| Sbjct 910 TAGAAGGCAGTTGCTCTATCCAACTGAGCTAA 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535331350542240