Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_019401.1
Length=358663
Score E
Sequences producing significant alignments: (Bits) Value
seq731 154 3e-32
seq18712 86.0 1e-11
>seq731
Length=34247
Score = 154 bits (170), Expect = 3e-32
Identities = 391/586 (67%), Gaps = 28/586 (5%)
Strand=Plus/Plus
Query 73416 GAAGGTTCAGCAGTGTATTGTGGTTTTGATCCTACTGCCGATTCTCTGCATATTGGTAGT 73475
|| ||| ||| || || |||||||||||||| || || ||||| | ||| | ||||||
Sbjct 29189 GAGGGTAAAGCTGTATACTGTGGTTTTGATCCAACGGCTGATTCATTACATGTAGGTAGT 29248
Query 73476 TTACTCCCACTGACTATCATGAATGTTTTTAAAAAACA-TGGAGTGAAAGTTATTGCGTT 73534
|| || || | | | ||| | || ||||||||| ||| ||||| || | | ||
Sbjct 29249 TTGCTTCCTTTAATCA-CATTATTGCGTTTAAAAAAGGCTGGTGTGAATGTAAAACCTTT 29307
Query 73535 ACTTGGCGGAGCAACTGGATCAATTGGTGATCCAAGCTTTAAATCTGAAGAACG-----T 73589
| |||| || ||||| || ||||| || || |||||| | ||||| |
Sbjct 29308 AATTGGTGGCGCAACAGGTATGATTGGAGACCCTTCTTTTAAAGAAAATGAACGCTCTTT 29367
Query 73590 AAAATGTTATCATGG-GATGATATTGACCGCAATGTTGCTGGTATTCGTGCAGTTATTAA 73648
||| || | ||| | ||||| | | || || ||||| | || ||
Sbjct 29368 AAACAGTAAAGATGTTGTTGATAATTTC---AAGCTTAAAATTATTCAACAA---ATAAA 29421
Query 73649 GAGTATTTTGGGCGATGTAGAAATT------GTAAACAATTATTCTTGGACTAAAGATAT 73702
|||||| | || | ||| ||| ||| | |||| | ||||| ||| || |
Sbjct 29422 GAGTATCGTTGG---TTCAGATATTACCGTAGTAGATAATTTTGAATGGACAAAAAATCT 29478
Query 73703 TAATATGCTTGAGTTTTTGCGTGATTACGGTAAATGCTTCACTGTGAATAATATGATGAA 73762
||| || | || ||||| || ||| || |||| ||| ||||| |||| ||| | ||
Sbjct 29479 TAACATTTTAGATTTTTTACGAGATACAGGAAAATTCTTTACTGTAAATACAATGCTAAA 29538
Query 73763 CAAAGAATCTGTACGTTCACGTATTGAACGCGATGAACAAGGTATTTCTTTCACTGAATT 73822
||||| |||||| || || |||||| | || || ||||| ||||| || || |||||
Sbjct 29539 AAAAGATTCTGTAAAATCCCGAATTGAAAGAGACGATCAAGGGATTTCATTTACAGAATT 29598
Query 73823 TTCGTATCAAATTCTTCAAGCAATGGACTTTGAATATTTGTACGAA-ATGAATAACTGCA 73881
| | || |||||| | |||| |||||| ||| | |||| | || |||| || |||
Sbjct 29599 TACATACCAAATTTTGCAAGGAATGGATTTTCACCATTTATTTAAACATGAG-AATTGCG 29657
Query 73882 AAATCCAAATTGGTGGTTCTGACCAATGGGGTAATATGATTGCTGGAATTGATTTGATTC 73941
||| ||||| ||||| ||| || ||||| ||||||||||| || ||||| | ||
Sbjct 29658 CAATTCAAATGGGTGGAAGTGATCAGTGGGGGAATATGATTGCAGGTATTGACCTAATCA 29717
Query 73942 ATAAAATCCACGGCAATGATGCAGACTGCGGTGTTATCACTATACC 73987
|||||| | | | | ||||||| ||||||| | ||| ||||
Sbjct 29718 ATAAAA---AAGAAAGTAATGCAGAAGTCGGTGTTTTTACTCTACC 29760
>seq18712
Length=4002
Score = 86.0 bits (94), Expect = 1e-11
Identities = 118/165 (72%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 134020 TAAGTTATCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAA 134079
|||||| || ||| |||||||| | ||| ||| | |||||||| || || |||||
Sbjct 3339 TAAGTTGTCTTGTCAGTTATATCAAAGAAGCGCAGATATGTTCTTAGGTGTTCCTTTCAA 3280
Query 134080 CATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTGG 134139
|| | | |||||| | ||||||||||| ||||| || ||| ||| ||| ||
Sbjct 3279 TATAGTATTCTATTCAATGCTAACTCATATTTTAGCCGCAGAACTTGGTATAGGAGTAGG 3220
Query 134140 TGAGTTTGTATGGATGGGTGGAGATGTTCACATTTATAAAAATCA 134184
||| || ||||| | ||||| ||| ||| |||||| | |||||
Sbjct 3219 TGAATTCATATGGGTAGGTGGTGATTGTCATATTTATGATAATCA 3175
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1147133870966402
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |