Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq731 154 3e-32 seq18712 86.0 1e-11 >seq731 Length=34247 Score = 154 bits (170), Expect = 3e-32 Identities = 391/586 (67%), Gaps = 28/586 (5%) Strand=Plus/Plus Query 73416 GAAGGTTCAGCAGTGTATTGTGGTTTTGATCCTACTGCCGATTCTCTGCATATTGGTAGT 73475 || ||| ||| || || |||||||||||||| || || ||||| | ||| | |||||| Sbjct 29189 GAGGGTAAAGCTGTATACTGTGGTTTTGATCCAACGGCTGATTCATTACATGTAGGTAGT 29248 Query 73476 TTACTCCCACTGACTATCATGAATGTTTTTAAAAAACA-TGGAGTGAAAGTTATTGCGTT 73534 || || || | | | ||| | || ||||||||| ||| ||||| || | | || Sbjct 29249 TTGCTTCCTTTAATCA-CATTATTGCGTTTAAAAAAGGCTGGTGTGAATGTAAAACCTTT 29307 Query 73535 ACTTGGCGGAGCAACTGGATCAATTGGTGATCCAAGCTTTAAATCTGAAGAACG-----T 73589 | |||| || ||||| || ||||| || || |||||| | ||||| | Sbjct 29308 AATTGGTGGCGCAACAGGTATGATTGGAGACCCTTCTTTTAAAGAAAATGAACGCTCTTT 29367 Query 73590 AAAATGTTATCATGG-GATGATATTGACCGCAATGTTGCTGGTATTCGTGCAGTTATTAA 73648 ||| || | ||| | ||||| | | || || ||||| | || || Sbjct 29368 AAACAGTAAAGATGTTGTTGATAATTTC---AAGCTTAAAATTATTCAACAA---ATAAA 29421 Query 73649 GAGTATTTTGGGCGATGTAGAAATT------GTAAACAATTATTCTTGGACTAAAGATAT 73702 |||||| | || | ||| ||| ||| | |||| | ||||| ||| || | Sbjct 29422 GAGTATCGTTGG---TTCAGATATTACCGTAGTAGATAATTTTGAATGGACAAAAAATCT 29478 Query 73703 TAATATGCTTGAGTTTTTGCGTGATTACGGTAAATGCTTCACTGTGAATAATATGATGAA 73762 ||| || | || ||||| || ||| || |||| ||| ||||| |||| ||| | || Sbjct 29479 TAACATTTTAGATTTTTTACGAGATACAGGAAAATTCTTTACTGTAAATACAATGCTAAA 29538 Query 73763 CAAAGAATCTGTACGTTCACGTATTGAACGCGATGAACAAGGTATTTCTTTCACTGAATT 73822 ||||| |||||| || || |||||| | || || ||||| ||||| || || ||||| Sbjct 29539 AAAAGATTCTGTAAAATCCCGAATTGAAAGAGACGATCAAGGGATTTCATTTACAGAATT 29598 Query 73823 TTCGTATCAAATTCTTCAAGCAATGGACTTTGAATATTTGTACGAA-ATGAATAACTGCA 73881 | | || |||||| | |||| |||||| ||| | |||| | || |||| || ||| Sbjct 29599 TACATACCAAATTTTGCAAGGAATGGATTTTCACCATTTATTTAAACATGAG-AATTGCG 29657 Query 73882 AAATCCAAATTGGTGGTTCTGACCAATGGGGTAATATGATTGCTGGAATTGATTTGATTC 73941 ||| ||||| ||||| ||| || ||||| ||||||||||| || ||||| | || Sbjct 29658 CAATTCAAATGGGTGGAAGTGATCAGTGGGGGAATATGATTGCAGGTATTGACCTAATCA 29717 Query 73942 ATAAAATCCACGGCAATGATGCAGACTGCGGTGTTATCACTATACC 73987 |||||| | | | | ||||||| ||||||| | ||| |||| Sbjct 29718 ATAAAA---AAGAAAGTAATGCAGAAGTCGGTGTTTTTACTCTACC 29760 >seq18712 Length=4002 Score = 86.0 bits (94), Expect = 1e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 134020 TAAGTTATCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAA 134079 |||||| || ||| |||||||| | ||| ||| | |||||||| || || ||||| Sbjct 3339 TAAGTTGTCTTGTCAGTTATATCAAAGAAGCGCAGATATGTTCTTAGGTGTTCCTTTCAA 3280 Query 134080 CATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTGG 134139 || | | |||||| | ||||||||||| ||||| || ||| ||| ||| || Sbjct 3279 TATAGTATTCTATTCAATGCTAACTCATATTTTAGCCGCAGAACTTGGTATAGGAGTAGG 3220 Query 134140 TGAGTTTGTATGGATGGGTGGAGATGTTCACATTTATAAAAATCA 134184 ||| || ||||| | ||||| ||| ||| |||||| | ||||| Sbjct 3219 TGAATTCATATGGGTAGGTGGTGATTGTCATATTTATGATAATCA 3175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147133870966402