Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_019402.1 Length=76631 Score E Sequences producing significant alignments: (Bits) Value seq2789 104 1e-17 >seq2789 Length=15484 Score = 104 bits (114), Expect = 1e-17 Identities = 230/345 (67%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 46494 CGTTGTCCCACCGTACTGGTGAGAAGCAACTTGAGCGGTAATCTGAGCCATTACTGCACA 46553 |||||| ||||| || ||| || ||||| || | || ||||| ||| || Sbjct 3554 CGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGT 3613 Query 46554 TGCCACACCAATAGATTTGGGTGATTCGATTTGAGCATTACCTAACTTGAAGCCATTTTC 46613 ||| ||||| || || | ||| |||| |||||| |||| || |||||| ||| Sbjct 3614 TGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTC 3673 Query 46614 CAACATACCTTTGAGGTCAACCAAACAGCAGTTGGTCATAGGTAGGAATGGAGAGTAGTC 46673 | ||| ||||| | ||||| || || || ||| || | ||||| || || || Sbjct 3674 AAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAATAATC 3733 Query 46674 CAAATCGTGGTAATGAATTTCGCCTCTCTCGTGAGCATCAACAATGTCCCGAGGAAGAAT 46733 ||||| || ||||||||||| ||| | || ||||| ||||| | ||| ||||| || Sbjct 3734 TAAATCATGATAATGAATTTCACCTTTTTCATGAGCGTCAACTACGTCTTTGGGAAGTAT 3793 Query 46734 GTAGTTGCGAGCGAAATGCTTAGAAACAACGCCGGCAAGTAAATCTCGCTGTACAGGGAA 46793 | || ||| |||| ||||||| | || || | ||||||| || || | Sbjct 3794 ATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTTTGAGTTGGAAT 3853 Query 46794 GACTTTGGCATCCTTGTTAGCGTTTTCTTTGAGGATTGATTCATC 46838 || ||| ||| || ||||| ||||| || || || |||| ||| Sbjct 3854 AACATTGCTATCTTTATTAGCATTTTCATTTAGTATGGATTTATC 3898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 245001653904688