Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_019452.1 Length=156628 Score E Sequences producing significant alignments: (Bits) Value seq4032 95.1 1e-14 seq1262 87.8 2e-12 >seq4032 Length=2654 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 136692 AGACGATGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAG 136751 |||| | ||||||||| |||||||||||||||||||||||||||||||||| |||| || Sbjct 1297 AGACCTTTTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAAGTTCGAG 1356 Query 136752 TCCTGCCATCGTCGCCAAAT 136771 || ||| |||||||||| Sbjct 1357 TCTTGCATGGGTCGCCAAAT 1376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 136692 AGACGATGTAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAG 136751 |||| | ||||||||| |||||||||||||||||||||||||||||||||| |||| || Sbjct 1560 AGACCTTTTAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCAAGTTCGAG 1619 Query 136752 TCCTGCCATCGTCGCCAAAT 136771 || ||| |||||||||| Sbjct 1620 TCTTGCATGGGTCGCCAAAT 1639 >seq1262 Length=72559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 136700 TAGTTCAGTCGGTAGAACGGTGGACTGTTAATCCATATGTCGCAGGTTCAAGTCCTGC 136757 ||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 60811 TAGTTCAGTTGGTAGAACGGTGGACTGTTAATCCATATGTCGCTGGTTCGAGTCCAGC 60754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500887123967520