Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12187 131 3e-25 >seq12187 Length=3570 Score = 131 bits (144), Expect = 3e-25 Identities = 351/532 (66%), Gaps = 10/532 (2%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 ||||||||||| | |||||||||||||| || || ||| | |||||||| || Sbjct 1551 CAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGG 1492 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 |||||||||| || | | || ||||||||||| | |||||| |||| |||||| Sbjct 1491 CCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAA 1432 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| || || || || || | | | ||| || ||| || || |||| Sbjct 1431 ATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAG 1372 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGA-TGCATGGCATCGTCTCTATGGCCCG 48369 ||||||| | ||||| || ||||||||||| | ||| |||| ||| || ||||| Sbjct 1371 ATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCA-GGCAGCGTTTCAATGGCGTT 1313 Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTA-GTG---AGCAGCTTTGCGT 48425 || || | | | || ||| || || ||| ||| | || | || Sbjct 1312 AAATAGAAAATCACGTTGTTTTGTGTC----ACGTATGTAGGTGTCAATCAAAATGCTGT 1257 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 |||| |||||||||||||| || || || || ||||| || || || | |||||| Sbjct 1256 ACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAG 1197 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545 | || |||||| | ||| | ||| | || ||| |||||||| || ||||| || | Sbjct 1196 TTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGG 1137 Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC 48605 | || || || || | ||||| | ||||| | ||| || | || | | || Sbjct 1136 CGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCC 1077 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 || | | | || |||| | |||||||| ||||| ||||| || || || Sbjct 1076 AGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGC 1025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931171260476160