Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 131 3e-25
>seq12187
Length=3570
Score = 131 bits (144), Expect = 3e-25
Identities = 351/532 (66%), Gaps = 10/532 (2%)
Strand=Plus/Minus
Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190
||||||||||| | |||||||||||||| || || ||| | |||||||| ||
Sbjct 1551 CAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGG 1492
Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250
|||||||||| || | | || ||||||||||| | |||||| |||| ||||||
Sbjct 1491 CCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAA 1432
Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310
|| ||||| || || || || || | | | ||| || ||| || || ||||
Sbjct 1431 ATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAG 1372
Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGA-TGCATGGCATCGTCTCTATGGCCCG 48369
||||||| | ||||| || ||||||||||| | ||| |||| ||| || |||||
Sbjct 1371 ATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCA-GGCAGCGTTTCAATGGCGTT 1313
Query 48370 GAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTA-GTG---AGCAGCTTTGCGT 48425
|| || | | | || ||| || || ||| ||| | || | ||
Sbjct 1312 AAATAGAAAATCACGTTGTTTTGTGTC----ACGTATGTAGGTGTCAATCAAAATGCTGT 1257
Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485
|||| |||||||||||||| || || || || ||||| || || || | ||||||
Sbjct 1256 ACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAG 1197
Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAG 48545
| || |||||| | ||| | ||| | || ||| |||||||| || ||||| || |
Sbjct 1196 TTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGG 1137
Query 48546 CAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCC 48605
| || || || || | ||||| | ||||| | ||| || | || | | ||
Sbjct 1136 CGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCC 1077
Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657
|| | | | || |||| | |||||||| ||||| ||||| || || ||
Sbjct 1076 AGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGC 1025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931171260476160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |