Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2021 109 1e-18 seq12187 104 4e-17 seq4853 104 4e-17 >seq2021 Length=2943 Score = 109 bits (120), Expect = 1e-18 Identities = 287/432 (66%), Gaps = 11/432 (3%) Strand=Plus/Minus Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 |||||||||||||| || || || | | |||||| ||||||||| ||| ||||| Sbjct 1148 TTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTA 1089 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA--GTT 221891 ||||||||| | ||| |||||| |||| ||||||| | | ||| ||| | ||| Sbjct 1088 TAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTT 1029 Query 221892 CTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGC 221950 || || | || || | ||| | ||| || || | | | | ||| || Sbjct 1028 ---TGAGCTTTAACAGTGCGATTGGCACGACCTTCACGCTCATATTTCTC---ATAAAGT 975 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 || || | |||||| | | || | || || || ||| || || ||||| || Sbjct 974 TGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGT 915 Query 222011 CTCCAGT-GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 ||| | || || || || | | |||||| | ||| || ||||| || || | Sbjct 914 GACCAATCGCCATCTGCCTCC-ACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATA 856 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 ||| | ||||| | || | ||| ||| ||| | |||||| ||| |||||||||||| Sbjct 855 AAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTC 796 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 ||| || || | |||||| || || | ||||| ||| | ||||| || || ||| ||| Sbjct 795 AAATATATCCGAGTGCCAGGGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCC 736 Query 222190 ACCCTGATCCAC 222201 ||||||||||| Sbjct 735 TCCCTGATCCAC 724 >seq12187 Length=3570 Score = 104 bits (114), Expect = 4e-17 Identities = 308/460 (67%), Gaps = 20/460 (4%) Strand=Plus/Plus Query 25581 GCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAA 25640 ||||||| | | | || |||||||| || || ||||||||||| || || || || || Sbjct 1102 GCATTTTATATCGCATGTTTTGGCATTTTTCGCCGCCTCTGATGGCATTGTCAATGAAAA 1161 Query 25641 TCTGTGCGAGAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTT 25699 | || ||| | |||| | ||||| || || || |||| ||||| || |||| Sbjct 1162 TTTGGTAGAGCGTTTCAGCCAAGAAGTACAAATAACTG-AGGCGCGTTGTTTTTATGGTT 1220 Query 25700 TCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGA-TGACGTAC 25758 |||| || ||||| ||||||||||||||||| |||| || || ||| |||| || Sbjct 1221 TCCAAATTGCCATGGAAAATGTGCACTCTGAAATGTA---CAGCATTTTGATTGAC--AC 1275 Query 25759 ATTACAGACGTCGCCGAGA-----GAGATCGGCTGTTTGGTGCCATCGAGCACATACCCA 25813 |||| |||| | | | | ||| || ||| ||||| || || || Sbjct 1276 -CTACATACGTGACACAAAACAACGTGATTTTCTATTTAACGCCATTGA-AACGCTGCCT 1333 Query 25814 GC-ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTACGTT 25871 || | |||| |||||| ||||||||| |||||| || | | | | || | || Sbjct 1334 GCTGTTAAGAAGAAGGCTGATTGGGCCATGGCCTGGATC-TCATCGAAATCGGCCAATTT 1392 Query 25872 TGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGC 25931 ||| ||||| | |||| ||||| ||||| ||||| || || ||||| || || || Sbjct 1393 TGGTGAGCGTATTATAGCATTTGCAGCTGTTGAGGGTATTTTCTTCAGTGGCAGTTTCGC 1452 Query 25932 GGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGC 25990 | || |||||||| ||| | | | || | |||||| || ||| || ||||| |||| Sbjct 1453 CTCTATTTTCTGGCTTAAG-AAACGTGGTCTCATGCCTGGCCTGACATTCTCCAATGAGC 1511 Query 25991 TCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTG 26030 | || | ||||| || | || | || |||||||| Sbjct 1512 TGATTTCACGTGACGAAGGCTTGCATTGTGACTTTGCCTG 1551 >seq4853 Length=2014 Score = 104 bits (114), Expect = 4e-17 Identities = 286/432 (66%), Gaps = 11/432 (3%) Strand=Plus/Plus Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 |||||||||||||| || || || | | |||||| ||||||||| ||| ||||| Sbjct 564 TTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTA 623 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA--GTT 221891 ||||||||| | ||| |||||| |||| |||||| | | ||| ||| | ||| Sbjct 624 TAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAACCACAAGGTT 683 Query 221892 CTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGC 221950 || || | || || | ||| | ||| || || | | | | ||| || Sbjct 684 ---TGAGCTTTAACAGTGCGATTGGCACGACCTTCACGCTCATATTTCTC---ATAAAGT 737 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 || || | |||||| | | || | || || || ||| || || ||||| || Sbjct 738 TGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGT 797 Query 222011 CTCCAGT-GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 ||| | || || || || | | |||||| | ||| || |||||||| || | Sbjct 798 GACCAATCGCCATCTGCCTCC-ACACGTTTCATGAACAAGTCGGGTATCCACAGAGCATA 856 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 || | ||||| | || | ||| ||| ||| | |||||| ||| |||||||||||| Sbjct 857 GAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTC 916 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 ||| || || | |||||| || |||| ||||| ||| | || || || || ||| ||| Sbjct 917 AAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTGCCGCC 976 Query 222190 ACCCTGATCCAC 222201 ||||||||||| Sbjct 977 TCCCTGATCCAC 988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928484303722560