Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq2021 109 1e-18
seq12187 104 4e-17
seq4853 104 4e-17
>seq2021
Length=2943
Score = 109 bits (120), Expect = 1e-18
Identities = 287/432 (66%), Gaps = 11/432 (3%)
Strand=Plus/Minus
Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833
|||||||||||||| || || || | | |||||| ||||||||| ||| |||||
Sbjct 1148 TTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTA 1089
Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA--GTT 221891
||||||||| | ||| |||||| |||| ||||||| | | ||| ||| | |||
Sbjct 1088 TAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTT 1029
Query 221892 CTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGC 221950
|| || | || || | ||| | ||| || || | | | | ||| ||
Sbjct 1028 ---TGAGCTTTAACAGTGCGATTGGCACGACCTTCACGCTCATATTTCTC---ATAAAGT 975
Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010
|| || | |||||| | | || | || || || ||| || || ||||| ||
Sbjct 974 TGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGT 915
Query 222011 CTCCAGT-GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069
||| | || || || || | | |||||| | ||| || ||||| || || |
Sbjct 914 GACCAATCGCCATCTGCCTCC-ACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATA 856
Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129
||| | ||||| | || | ||| ||| ||| | |||||| ||| ||||||||||||
Sbjct 855 AAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTC 796
Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189
||| || || | |||||| || || | ||||| ||| | ||||| || || ||| |||
Sbjct 795 AAATATATCCGAGTGCCAGGGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCC 736
Query 222190 ACCCTGATCCAC 222201
|||||||||||
Sbjct 735 TCCCTGATCCAC 724
>seq12187
Length=3570
Score = 104 bits (114), Expect = 4e-17
Identities = 308/460 (67%), Gaps = 20/460 (4%)
Strand=Plus/Plus
Query 25581 GCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAA 25640
||||||| | | | || |||||||| || || ||||||||||| || || || || ||
Sbjct 1102 GCATTTTATATCGCATGTTTTGGCATTTTTCGCCGCCTCTGATGGCATTGTCAATGAAAA 1161
Query 25641 TCTGTGCGAGAGATTCACCAGGGAAGTGCAG-TACGTGGAGGCCAAGTGTTTCTACGGTT 25699
| || ||| | |||| | ||||| || || || |||| ||||| || ||||
Sbjct 1162 TTTGGTAGAGCGTTTCAGCCAAGAAGTACAAATAACTG-AGGCGCGTTGTTTTTATGGTT 1220
Query 25700 TCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGA-TGACGTAC 25758
|||| || ||||| ||||||||||||||||| |||| || || ||| |||| ||
Sbjct 1221 TCCAAATTGCCATGGAAAATGTGCACTCTGAAATGTA---CAGCATTTTGATTGAC--AC 1275
Query 25759 ATTACAGACGTCGCCGAGA-----GAGATCGGCTGTTTGGTGCCATCGAGCACATACCCA 25813
|||| |||| | | | | ||| || ||| ||||| || || ||
Sbjct 1276 -CTACATACGTGACACAAAACAACGTGATTTTCTATTTAACGCCATTGA-AACGCTGCCT 1333
Query 25814 GC-ATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGC-GCTACGTT 25871
|| | |||| |||||| ||||||||| |||||| || | | | | || | ||
Sbjct 1334 GCTGTTAAGAAGAAGGCTGATTGGGCCATGGCCTGGATC-TCATCGAAATCGGCCAATTT 1392
Query 25872 TGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGC 25931
||| ||||| | |||| ||||| ||||| ||||| || || ||||| || || ||
Sbjct 1393 TGGTGAGCGTATTATAGCATTTGCAGCTGTTGAGGGTATTTTCTTCAGTGGCAGTTTCGC 1452
Query 25932 GGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGC 25990
| || |||||||| ||| | | | || | |||||| || ||| || ||||| ||||
Sbjct 1453 CTCTATTTTCTGGCTTAAG-AAACGTGGTCTCATGCCTGGCCTGACATTCTCCAATGAGC 1511
Query 25991 TCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTG 26030
| || | ||||| || | || | || ||||||||
Sbjct 1512 TGATTTCACGTGACGAAGGCTTGCATTGTGACTTTGCCTG 1551
>seq4853
Length=2014
Score = 104 bits (114), Expect = 4e-17
Identities = 286/432 (66%), Gaps = 11/432 (3%)
Strand=Plus/Plus
Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833
|||||||||||||| || || || | | |||||| ||||||||| ||| |||||
Sbjct 564 TTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTA 623
Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGA--GTT 221891
||||||||| | ||| |||||| |||| |||||| | | ||| ||| | |||
Sbjct 624 TAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAACCACAAGGTT 683
Query 221892 CTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGC 221950
|| || | || || | ||| | ||| || || | | | | ||| ||
Sbjct 684 ---TGAGCTTTAACAGTGCGATTGGCACGACCTTCACGCTCATATTTCTC---ATAAAGT 737
Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010
|| || | |||||| | | || | || || || ||| || || ||||| ||
Sbjct 738 TGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGT 797
Query 222011 CTCCAGT-GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069
||| | || || || || | | |||||| | ||| || |||||||| || |
Sbjct 798 GACCAATCGCCATCTGCCTCC-ACACGTTTCATGAACAAGTCGGGTATCCACAGAGCATA 856
Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129
|| | ||||| | || | ||| ||| ||| | |||||| ||| ||||||||||||
Sbjct 857 GAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTC 916
Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189
||| || || | |||||| || |||| ||||| ||| | || || || || ||| |||
Sbjct 917 AAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTGCCGCC 976
Query 222190 ACCCTGATCCAC 222201
|||||||||||
Sbjct 977 TCCCTGATCCAC 988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928484303722560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |