Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_019503.1
Length=166499
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 143 3e-29
seq2410 84.2 2e-11
>seq2789
Length=15484
Score = 143 bits (158), Expect = 3e-29
Identities = 499/764 (65%), Gaps = 21/764 (3%)
Strand=Plus/Plus
Query 42028 AATATCAGGATACATTCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 42087
||||||||||||||||| || ||| ||| || || || || || || |||||||| ||
Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190
Query 42088 CGGATCGTCTTTATAAAGATTAACGCCTTCTTCAACGAACATAACAAGCTTAGGGAAAAT 42147
|||||| ||| ||| ||||||| | | | |||||| || || || |
Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATAC 3250
Query 42148 AGGAGTTATCCCATCGCGACCAAGACCTTTAATGCGATTTTTCAGAATTGCTTTCTGAAT 42207
| ||| | || || | || || || | ||| | | |||| ||| |||||
Sbjct 3251 TGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAAT 3310
Query 42208 CATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTC 42266
| || ||| | || | | | || ||||| || || ||||| || |||||||
Sbjct 3311 TAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTC 3369
Query 42267 CATTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCATATACAT 42326
|||||| || | |||||| | ||||||||| | |||| || |||||| | ||||
Sbjct 3370 CATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-ACAT 3428
Query 42327 -CTTTTTCTGTTTTAGATTGGGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCA 42385
||||||| |||| | |||| || | || | ||| | |||||||||
Sbjct 3429 TCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTT 3488
Query 42386 TCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTACA 42442
|| | ||| ||| | || || |||| ||||||| | ||| || | ||| | |
Sbjct 3489 TCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGATA 3545
Query 42443 TTCGCAAAAGTCGTTCCGCCATATTGATGAGAAGCAACCTGTGCAGTAATTTGTGCCATA 42502
|| || || ||||| ||||| |||| || || || || | ||||| || |
Sbjct 3546 TTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTT 3605
Query 42503 ATTGCAGTAGCAACGCCGATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAAT 42562
|| || || || || ||||| ||||||||||| | ||||| || | |||||
Sbjct 3606 ATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAG 3665
Query 42563 CCGTTTTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCAGGG 42622
|| ||||||||||||||||||||| ||||| |||||| | ||||| | ||
Sbjct 3666 CCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGT 3725
Query 42623 GAATAATCAATATCATGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAATAAAAGAC 42682
|||||||| | |||||| |||| || || ||||||| || ||| | | | | |
Sbjct 3726 GAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTC 3781
Query 42683 ----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCG 42735
|| | || |||||| ||| |||||||| | |||||||| | | || |
Sbjct 3782 TTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCT 3841
Query 42736 TTGAGTTGGAAAAACACGAGAATCTTTATTGGCATTCTCGTTTA 42779
||||||||||| |||| ||||||||| ||||| || ||||
Sbjct 3842 TTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
>seq2410
Length=3205
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/152 (75%), Gaps = 8/152 (5%)
Strand=Plus/Minus
Query 69302 TTGGTGGCCCTGGGTGGAATTGAACCACC-ATCTGGCGATTATGAGTCGCTTGCTTGAAC 69360
|||||||||| | |||| |||||||| | | || ||||||||||||| ||||| |||
Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968
Query 69361 CTTC-CAGCTACAGGGCCTTGGT--GCTGATTGACGGAATCGAACCGCCGACCTTCTCAT 69417
| | ||||| |||| | |||| |||| | ||| ||||||| ||||| || |
Sbjct 967 CAACTGAGCTA-AGGGGCGTGGTACGCTG--TATAGGATTCGAACCTATGACCTACTGCT 911
Query 69418 TACAAGTGAGTTGCTCTA-CCTACTGAGCTAA 69448
|| ||| |||||||||| || ||||||||||
Sbjct 910 TAGAAGGCAGTTGCTCTATCCAACTGAGCTAA 879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 532462064580360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |