Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_019503.1 Length=166499 Score E Sequences producing significant alignments: (Bits) Value seq2789 143 3e-29 seq2410 84.2 2e-11 >seq2789 Length=15484 Score = 143 bits (158), Expect = 3e-29 Identities = 499/764 (65%), Gaps = 21/764 (3%) Strand=Plus/Plus Query 42028 AATATCAGGATACATTCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 42087 ||||||||||||||||| || ||| ||| || || || || || || |||||||| || Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 42088 CGGATCGTCTTTATAAAGATTAACGCCTTCTTCAACGAACATAACAAGCTTAGGGAAAAT 42147 |||||| ||| ||| ||||||| | | | |||||| || || || | Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATAC 3250 Query 42148 AGGAGTTATCCCATCGCGACCAAGACCTTTAATGCGATTTTTCAGAATTGCTTTCTGAAT 42207 | ||| | || || | || || || | ||| | | |||| ||| ||||| Sbjct 3251 TGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAAT 3310 Query 42208 CATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTC 42266 | || ||| | || | | | || ||||| || || ||||| || ||||||| Sbjct 3311 TAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTC 3369 Query 42267 CATTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCATATACAT 42326 |||||| || | |||||| | ||||||||| | |||| || |||||| | |||| Sbjct 3370 CATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-ACAT 3428 Query 42327 -CTTTTTCTGTTTTAGATTGGGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCA 42385 ||||||| |||| | |||| || | || | ||| | ||||||||| Sbjct 3429 TCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTT 3488 Query 42386 TCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTACA 42442 || | ||| ||| | || || |||| ||||||| | ||| || | ||| | | Sbjct 3489 TCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGATA 3545 Query 42443 TTCGCAAAAGTCGTTCCGCCATATTGATGAGAAGCAACCTGTGCAGTAATTTGTGCCATA 42502 || || || ||||| ||||| |||| || || || || | ||||| || | Sbjct 3546 TTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTT 3605 Query 42503 ATTGCAGTAGCAACGCCGATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAAT 42562 || || || || || ||||| ||||||||||| | ||||| || | ||||| Sbjct 3606 ATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAG 3665 Query 42563 CCGTTTTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCAGGG 42622 || ||||||||||||||||||||| ||||| |||||| | ||||| | || Sbjct 3666 CCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGT 3725 Query 42623 GAATAATCAATATCATGGAAATGGATAATTCCGCTTTCATGCGCTTTCATAATAAAAGAC 42682 |||||||| | |||||| |||| || || ||||||| || ||| | | | | | Sbjct 3726 GAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTC 3781 Query 42683 ----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCG 42735 || | || |||||| ||| |||||||| | |||||||| | | || | Sbjct 3782 TTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCT 3841 Query 42736 TTGAGTTGGAAAAACACGAGAATCTTTATTGGCATTCTCGTTTA 42779 ||||||||||| |||| ||||||||| ||||| || |||| Sbjct 3842 TTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 >seq2410 Length=3205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/152 (75%), Gaps = 8/152 (5%) Strand=Plus/Minus Query 69302 TTGGTGGCCCTGGGTGGAATTGAACCACC-ATCTGGCGATTATGAGTCGCTTGCTTGAAC 69360 |||||||||| | |||| |||||||| | | || ||||||||||||| ||||| ||| Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968 Query 69361 CTTC-CAGCTACAGGGCCTTGGT--GCTGATTGACGGAATCGAACCGCCGACCTTCTCAT 69417 | | ||||| |||| | |||| |||| | ||| ||||||| ||||| || | Sbjct 967 CAACTGAGCTA-AGGGGCGTGGTACGCTG--TATAGGATTCGAACCTATGACCTACTGCT 911 Query 69418 TACAAGTGAGTTGCTCTA-CCTACTGAGCTAA 69448 || ||| |||||||||| || |||||||||| Sbjct 910 TAGAAGGCAGTTGCTCTATCCAACTGAGCTAA 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532462064580360