Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_019505.1
Length=166452
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 159 4e-34
seq2410 84.2 2e-11
>seq2789
Length=15484
Score = 159 bits (176), Expect = 4e-34
Identities = 508/767 (66%), Gaps = 27/767 (4%)
Strand=Plus/Plus
Query 41947 AATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAATT 42006
||||||||||||||| | || ||| ||| || || || || || || |||||||||||
Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190
Query 42007 CGGATCGTCTTTGTAAAG--ATTAACGCCTTCTTCGACGAACATAACAAGCTTAGGAAAA 42064
|||||| || | ||| ||| ||||||| | | | |||||| || |||||
Sbjct 3191 AGGATCG-CTAT-TAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAAT 3248
Query 42065 ATAGGAGTTATCCCATCACGACCGAGACCTTTAATGCGGTTTTTAAGAATTGCCTTCTGA 42124
| | ||| | || || | || || || | |||| | | |||| || |||
Sbjct 3249 ACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGA 3308
Query 42125 ATCATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTG 42183
|| | || ||| | || | | | || ||||| || || ||||| || |||||
Sbjct 3309 ATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTG 3367
Query 42184 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATAC 42243
||| |||| || | |||||| | ||||||||| | |||| || ||||| | ||
Sbjct 3368 TCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-AC 3426
Query 42244 AT-CTTTTTCTGTTTTAGATTGAGCATAATTTAAC-GCATCAGCGATTTGCCATTTTTCT 42301
|| ||||||| |||| | | |||| |||| | | || | ||| | ||||||||
Sbjct 3427 ATTCTTTTTCAATTTTTTCATTAACATA-TTTATCTGGATTGGGGATATTATATTTTTCT 3485
Query 42302 GCATCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCT 42358
| || | ||| ||| | || || |||| ||||||| | ||| || | |||
Sbjct 3486 GTTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCG 3542
Query 42359 ACATTAGCAAAAGTCGTTCCGCCATATTGATGGGAAGCAACTTGCGCAGTAATTTGTGCC 42418
| ||| || || ||||| ||||| ||| || |||||||| | ||||| ||
Sbjct 3543 ATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCA 3602
Query 42419 ATAATTGCAGTAGCAACGCCAATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTA 42478
| || || || || |||||||| ||||||||||| | ||||| || | |||
Sbjct 3603 GTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTA 3662
Query 42479 AATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCA 42538
|| || |||||||||||||||||||| ||||| |||||| | ||||| |
Sbjct 3663 AAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAAT 3722
Query 42539 GGGGAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAA 42598
|| |||||||| | |||||| ||||||| || ||||||| || ||| | | |
Sbjct 3723 GGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--AC 3778
Query 42599 GAC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTC 42651
| | || | || |||||| ||| |||||||| | |||||||| | | ||
Sbjct 3779 GTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATC 3838
Query 42652 CCGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 42698
| ||||||||||| |||| ||||||||||||||| || ||||
Sbjct 3839 TCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
>seq2410
Length=3205
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/152 (75%), Gaps = 8/152 (5%)
Strand=Plus/Minus
Query 69642 TTGGTGGCCCTGGGTGGAATTGAACCACC-ATCTGGCGATTATGAGTCGCTTGCTTGAAC 69700
|||||||||| | |||| |||||||| | | || ||||||||||||| ||||| |||
Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968
Query 69701 CTTC-CAGCTACAGGGCCTTGGT--GCTGATTGACGGAATCGAACCGCCGACCTTCTCAT 69757
| | ||||| |||| | |||| |||| | ||| ||||||| ||||| || |
Sbjct 967 CAACTGAGCTA-AGGGGCGTGGTACGCTG--TATAGGATTCGAACCTATGACCTACTGCT 911
Query 69758 TACAAGTGAGTTGCTCTA-CCTACTGAGCTAA 69788
|| ||| |||||||||| || ||||||||||
Sbjct 910 TAGAAGGCAGTTGCTCTATCCAACTGAGCTAA 879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 532311722952480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |