Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_019505.1 Length=166452 Score E Sequences producing significant alignments: (Bits) Value seq2789 159 4e-34 seq2410 84.2 2e-11 >seq2789 Length=15484 Score = 159 bits (176), Expect = 4e-34 Identities = 508/767 (66%), Gaps = 27/767 (4%) Strand=Plus/Plus Query 41947 AATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAATT 42006 ||||||||||||||| | || ||| ||| || || || || || || ||||||||||| Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 42007 CGGATCGTCTTTGTAAAG--ATTAACGCCTTCTTCGACGAACATAACAAGCTTAGGAAAA 42064 |||||| || | ||| ||| ||||||| | | | |||||| || ||||| Sbjct 3191 AGGATCG-CTAT-TAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAAT 3248 Query 42065 ATAGGAGTTATCCCATCACGACCGAGACCTTTAATGCGGTTTTTAAGAATTGCCTTCTGA 42124 | | ||| | || || | || || || | |||| | | |||| || ||| Sbjct 3249 ACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGA 3308 Query 42125 ATCATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTG 42183 || | || ||| | || | | | || ||||| || || ||||| || ||||| Sbjct 3309 ATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTG 3367 Query 42184 TCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATAC 42243 ||| |||| || | |||||| | ||||||||| | |||| || ||||| | || Sbjct 3368 TCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-AC 3426 Query 42244 AT-CTTTTTCTGTTTTAGATTGAGCATAATTTAAC-GCATCAGCGATTTGCCATTTTTCT 42301 || ||||||| |||| | | |||| |||| | | || | ||| | |||||||| Sbjct 3427 ATTCTTTTTCAATTTTTTCATTAACATA-TTTATCTGGATTGGGGATATTATATTTTTCT 3485 Query 42302 GCATCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCT 42358 | || | ||| ||| | || || |||| ||||||| | ||| || | ||| Sbjct 3486 GTTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCG 3542 Query 42359 ACATTAGCAAAAGTCGTTCCGCCATATTGATGGGAAGCAACTTGCGCAGTAATTTGTGCC 42418 | ||| || || ||||| ||||| ||| || |||||||| | ||||| || Sbjct 3543 ATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCA 3602 Query 42419 ATAATTGCAGTAGCAACGCCAATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTA 42478 | || || || || |||||||| ||||||||||| | ||||| || | ||| Sbjct 3603 GTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTA 3662 Query 42479 AATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCA 42538 || || |||||||||||||||||||| ||||| |||||| | ||||| | Sbjct 3663 AAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAAT 3722 Query 42539 GGGGAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAA 42598 || |||||||| | |||||| ||||||| || ||||||| || ||| | | | Sbjct 3723 GGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--AC 3778 Query 42599 GAC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTC 42651 | | || | || |||||| ||| |||||||| | |||||||| | | || Sbjct 3779 GTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATC 3838 Query 42652 CCGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 42698 | ||||||||||| |||| ||||||||||||||| || |||| Sbjct 3839 TCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 >seq2410 Length=3205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/152 (75%), Gaps = 8/152 (5%) Strand=Plus/Minus Query 69642 TTGGTGGCCCTGGGTGGAATTGAACCACC-ATCTGGCGATTATGAGTCGCTTGCTTGAAC 69700 |||||||||| | |||| |||||||| | | || ||||||||||||| ||||| ||| Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968 Query 69701 CTTC-CAGCTACAGGGCCTTGGT--GCTGATTGACGGAATCGAACCGCCGACCTTCTCAT 69757 | | ||||| |||| | |||| |||| | ||| ||||||| ||||| || | Sbjct 967 CAACTGAGCTA-AGGGGCGTGGTACGCTG--TATAGGATTCGAACCTATGACCTACTGCT 911 Query 69758 TACAAGTGAGTTGCTCTA-CCTACTGAGCTAA 69788 || ||| |||||||||| || |||||||||| Sbjct 910 TAGAAGGCAGTTGCTCTATCCAACTGAGCTAA 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532311722952480