Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq17421 161 2e-34 seq18712 87.8 4e-12 seq4088 84.2 5e-11 >seq17421 Length=2767 Score = 161 bits (178), Expect = 2e-34 Identities = 150/192 (78%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 177184 ATTCCACAATCAGACGTATATGGTGTAAGTTACGTCGATGAAATCCAGAACAAGATCTCT 177243 |||||||||||| ||||||||||||||| |||||| ||| |||||| | | Sbjct 408 ATTCCACAATCAAACGTATATGGTGTAATTTACGTTGATAAAATCC---------TTTAA 358 Query 177244 GGTACTCTAGGAAGTGGTGAATGTTAACCTAGACGGGCTTGTTAATTGGACGATAAGCAA 177303 |||| | ||||||||||||| |||||| | |||| ||| | ||||||||||||||| Sbjct 357 GGTAACCCTGGAAGTGGTGAATTGTAACCTGGGCGGGATTGATGTTTGGACGATAAGCAA 298 Query 177304 TTAATACTTGACTAGCAGGTTTAAATTAGAGGTGACTGTCCTTCACTATACTGGAAAACC 177363 | || ||||| ||||| || ||| | |||||||| |||||||| ||||||||||||| Sbjct 297 ACATTAGTTGACAAGCAGCTTGAAACTTGAGGTGACATTCCTTCACCATACTGGAAAACC 238 Query 177364 GGATGGATTTTT 177375 || ||||| ||| Sbjct 237 GGGTGGATATTT 226 Score = 104 bits (114), Expect = 5e-17 Identities = 128/174 (74%), Gaps = 1/174 (1%) Strand=Plus/Minus Query 177229 CAGAACAAGATCTCTGGTACTCTAGGAAGTGGTGAATGTTAACCTAGACGGGCTTGTTAA 177288 |||||||||||||||| | || | ||||| ||| | || || |||| ||| | Sbjct 688 CAGAACAAGATCTCTGAAAACCTTAGCAGTGGGAAAT-TAGACTAAGGCGGGTTTGATGT 630 Query 177289 TTGGACGATAAGCAATTAATACTTGACTAGCAGGTTTAAATTAGAGGTGACTGTCCTTCA 177348 || ||||||| | || | || ||||| ||||| || ||| | |||||||| ||||||| Sbjct 629 TTTGACGATAGGGAAACATTAGTTGACAAGCAGCTTAAAACTTGAGGTGACATTCCTTCA 570 Query 177349 CTATACTGGAAAACCGGATGGATTTTTAATTAAAAAAGTGTTGAACAAAATGTT 177402 | | |||||||||||||||||| || | || || | || ||||||||| || Sbjct 569 CCAAACTGGAAAACCGGATGGAATTATTATCAAGGAGCCGTCGAACAAAATTTT 516 >seq18712 Length=4002 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 38391 GCAGATACATTCTTGGGAGTTCCACTGAATATCACATCATATTCAGTACTCACTCATATG 38450 ||||||| ||||| || ||||| | ||||| || |||||| | || |||||||| Sbjct 3308 GCAGATATGTTCTTAGGTGTTCCTTTCAATATAGTATTCTATTCAATGCTAACTCATATT 3249 Query 38451 ATAGCACAAATTACTGGAT-TAGAAGTTGGTGAATTTATCTGGAACGGTGGAGATTGTCA 38509 |||| | | ||| | | ||| ||| |||||||| || ||| ||||| |||||||| Sbjct 3248 TTAGC-CGCAGAACTTGGTATAGGAGTAGGTGAATTCATATGGGTAGGTGGTGATTGTCA 3190 Query 38510 TATTTACTTGAATCATATCGAACAAGTAAAAGAACAATTA 38549 |||||| |||||||| || |||| | ||| |||||| Sbjct 3189 TATTTATGATAATCATATTGAGCAAGCATTAGAGCAATTA 3150 >seq4088 Length=5036 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 178309 TTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTCGAGTCCAG 178367 |||| ||||||||||||| |||| ||||||||||| ||||||| ||||||||||||||| Sbjct 4254 TTAGCTCAGTTGGATAGAGCAACCGCCTTCTAAGCGGTAGGTCGCTGGTTCGAGTCCAG 4312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106017434224088