Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_019526.1
Length=345809
Score E
Sequences producing significant alignments: (Bits) Value
seq17421 161 2e-34
seq18712 87.8 4e-12
seq4088 84.2 5e-11
>seq17421
Length=2767
Score = 161 bits (178), Expect = 2e-34
Identities = 150/192 (78%), Gaps = 9/192 (5%)
Strand=Plus/Minus
Query 177184 ATTCCACAATCAGACGTATATGGTGTAAGTTACGTCGATGAAATCCAGAACAAGATCTCT 177243
|||||||||||| ||||||||||||||| |||||| ||| |||||| | |
Sbjct 408 ATTCCACAATCAAACGTATATGGTGTAATTTACGTTGATAAAATCC---------TTTAA 358
Query 177244 GGTACTCTAGGAAGTGGTGAATGTTAACCTAGACGGGCTTGTTAATTGGACGATAAGCAA 177303
|||| | ||||||||||||| |||||| | |||| ||| | |||||||||||||||
Sbjct 357 GGTAACCCTGGAAGTGGTGAATTGTAACCTGGGCGGGATTGATGTTTGGACGATAAGCAA 298
Query 177304 TTAATACTTGACTAGCAGGTTTAAATTAGAGGTGACTGTCCTTCACTATACTGGAAAACC 177363
| || ||||| ||||| || ||| | |||||||| |||||||| |||||||||||||
Sbjct 297 ACATTAGTTGACAAGCAGCTTGAAACTTGAGGTGACATTCCTTCACCATACTGGAAAACC 238
Query 177364 GGATGGATTTTT 177375
|| ||||| |||
Sbjct 237 GGGTGGATATTT 226
Score = 104 bits (114), Expect = 5e-17
Identities = 128/174 (74%), Gaps = 1/174 (1%)
Strand=Plus/Minus
Query 177229 CAGAACAAGATCTCTGGTACTCTAGGAAGTGGTGAATGTTAACCTAGACGGGCTTGTTAA 177288
|||||||||||||||| | || | ||||| ||| | || || |||| ||| |
Sbjct 688 CAGAACAAGATCTCTGAAAACCTTAGCAGTGGGAAAT-TAGACTAAGGCGGGTTTGATGT 630
Query 177289 TTGGACGATAAGCAATTAATACTTGACTAGCAGGTTTAAATTAGAGGTGACTGTCCTTCA 177348
|| ||||||| | || | || ||||| ||||| || ||| | |||||||| |||||||
Sbjct 629 TTTGACGATAGGGAAACATTAGTTGACAAGCAGCTTAAAACTTGAGGTGACATTCCTTCA 570
Query 177349 CTATACTGGAAAACCGGATGGATTTTTAATTAAAAAAGTGTTGAACAAAATGTT 177402
| | |||||||||||||||||| || | || || | || ||||||||| ||
Sbjct 569 CCAAACTGGAAAACCGGATGGAATTATTATCAAGGAGCCGTCGAACAAAATTTT 516
>seq18712
Length=4002
Score = 87.8 bits (96), Expect = 4e-12
Identities = 117/160 (73%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 38391 GCAGATACATTCTTGGGAGTTCCACTGAATATCACATCATATTCAGTACTCACTCATATG 38450
||||||| ||||| || ||||| | ||||| || |||||| | || ||||||||
Sbjct 3308 GCAGATATGTTCTTAGGTGTTCCTTTCAATATAGTATTCTATTCAATGCTAACTCATATT 3249
Query 38451 ATAGCACAAATTACTGGAT-TAGAAGTTGGTGAATTTATCTGGAACGGTGGAGATTGTCA 38509
|||| | | ||| | | ||| ||| |||||||| || ||| ||||| ||||||||
Sbjct 3248 TTAGC-CGCAGAACTTGGTATAGGAGTAGGTGAATTCATATGGGTAGGTGGTGATTGTCA 3190
Query 38510 TATTTACTTGAATCATATCGAACAAGTAAAAGAACAATTA 38549
|||||| |||||||| || |||| | ||| ||||||
Sbjct 3189 TATTTATGATAATCATATTGAGCAAGCATTAGAGCAATTA 3150
>seq4088
Length=5036
Score = 84.2 bits (92), Expect = 5e-11
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 178309 TTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTCGAGTCCAG 178367
|||| ||||||||||||| |||| ||||||||||| ||||||| |||||||||||||||
Sbjct 4254 TTAGCTCAGTTGGATAGAGCAACCGCCTTCTAAGCGGTAGGTCGCTGGTTCGAGTCCAG 4312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1106017434224088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |