Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq2789 147 3e-30 seq1262 111 2e-19 seq2410 109 8e-19 seq4088 96.9 5e-15 seq2305 84.2 3e-11 >seq2789 Length=15484 Score = 147 bits (162), Expect = 3e-30 Identities = 533/810 (66%), Gaps = 38/810 (5%) Strand=Plus/Plus Query 115569 ATAGTCAATAATTTTCATAGATGTTTTACCCTTCTGATGGA-TTCTTTATGTTTACCTTC 115627 ||| || || ||||| || ||| || || || || || | ||||| ||||| |||| Sbjct 2083 ATACTCCATTATTTTT-TAAATGCTTAACTCTACTT-TGAACTTCTTCTTGTTTTCCTTT 2140 Query 115628 GTTCAACGGACGTTTTTCTACATCACCAAGATATCCACAAACTCTACGCTTAACATCCAA 115687 || ||||| | | || ||| | ||||||||| ||||| | | ||| | Sbjct 2141 ATTAAACGGCCTTGAATCAGGGCTACCTAAATATCCACATACTCTTCTTATCACAGATAC 2200 Query 115688 TTTACTACCGTCATGGTTCCCACATGATGGACATTCATAACCCTTGGATGTAGGAACCAT 115747 ||| || | ||||| || ||||| ||||| | ||||||| ||| | | | Sbjct 2201 TTTTCTTGCATCATGATTACCACAACTAGGACAAGAAAAACCCTTACTTGTGCAATCAAA 2260 Query 115748 TTCCCCATGATAACCACAATCAAAACACTGGTCGATTGGGGTATTTGTCCCATAATAAGG 115807 ||| || | ||| ||||| ||| |||||| ||| ||||| |||||||| ||||||||||| Sbjct 2261 TTCGCCTTTATATCCACATTCATAACACTCGTCAATTGGAGTATTTGTTCCATAATAAGG 2320 Query 115808 GGTATTTTGATACGCAAAATCCCAAACATCTTCGAGTGCCTTTAAGTTATTTTTCATATT 115867 | || ||| |||||||||||||||||| | ||| || | || ||| ||||||| Sbjct 2321 CACAAATTTATAACTAAAATCCCAAACATCTTCTAATGCTTTAATATTTTTTCTCATATT 2380 Query 115868 TGGAAATTCGCCATATGAAATAAAACCACCTTTCGAATATGTAATGAAAT-CTCGTTCAA 115926 ||| |||| || || ||||||| ||||| || | | || | || || | ||||| Sbjct 2381 AGGATATTCACCGTAACAAATAAAGCCACCATTTGCAAAT-TCTGGATATGATTTTTCAA 2439 Query 115927 ACAGGATCTTGTGGTATGGGT---CTGTTTTATACTCAACGTCAAGATGGAAACTATTCG 115983 | || || || | ||||| | ||| ||| | ||| || | ||||||||||| | Sbjct 2440 AAAGAATTTTTTCATATGGATTTACTGATTT---TTTAACATCCAAGTGGAAACTATTTG 2496 Query 115984 TGTAAT-ATCCTTTTTCATGA-ACCAT--ATGAGG--ATATTTCGTTTCGTCGATATCAA 116037 | |||| || ||| | | | ||| | || | | | ||| ||| || | || Sbjct 2497 TATAATAATTCTTGTCTGTAACACCTTTAATAATGCCAAATTCTTTTTTATCTA-ATTGG 2555 Query 116038 CAAAA-CGCTTACAAAGAGATTCTGATGGTGTTCCATATAATGAAAATGCAAACCCAGTT 116096 ||||| | | ||||||| ||| ||| || | |||||| ||| || | || ||| Sbjct 2556 CAAAATCTATCACAAAGATTTTCACTTGGCGTGCTATATAAACTAAAACCATATCCTGTT 2615 Query 116097 TCATCTGTCCACCGGTCTGTTATATATTTCATCTTTCGAAGAATTGA-AATACAAAATTC 116155 |||| | |||| | ||| | | | | | ||| || ||| | ||| |||||||| Sbjct 2616 TCATTTTTCCAGCTATCTACTGCCTCTCTTAATTTTTTAACAATAAATAATCCAAAATTC 2675 Query 116156 TTTCTTTTCTTCATTTCCGAAAATATGAGAATCGTCATTGAATTTCACA-ATTTCACT-- 116212 ||| || |||||||| | || ||||| | | ||| | | ||| | ||| || | Sbjct 2676 TTT-TTATCTTCATTGTCAAACATATG----TTCTGATTCACTATCAAACATTGCATTAA 2730 Query 116213 -TACTTCATGCAAACCAATATATCCACAGGAAACGGAAGAACGTCCGTTTTGGAAAAGAG 116271 | |||||| | || ||||| || | |||| || | | ||| |||| |||| Sbjct 2731 CTGCTTCATTTATTCCTATATAGCCTAATGAAATTGATGCTCTTCCATTTTTAAAAATTT 2790 Query 116272 GATATATCTCATCATTTGCGTTTAAACGAGCTACTGCGC-----CATTCA-TATACAATA 116325 | || ||||| | || | |||| | || | ||| | |||| ||||||||| Sbjct 2791 CAATAATATCATCTTCTG-GATTAA--GTCTTATTCCGCAAGCACCTTCAGTATACAATA 2847 Query 116326 TGGGGGCACACGATGCTTTAACACCTTTGA 116355 |||||||| | ||||| |||||||||| Sbjct 2848 TGGGGGCAACCTTAGCTTTTACACCTTTGA 2877 >seq1262 Length=72559 Score = 111 bits (122), Expect = 2e-19 Identities = 75/83 (90%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 198935 GGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAG 198994 ||||||||||||||||||||||||||| ||||||||||||| | |||| ||||||| || Sbjct 63894 GGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAAG 63835 Query 198995 TCCAGTAGGGGCCACCAGATAAA 199017 ||||| ||||||||||| ||||| Sbjct 63834 TCCAGCAGGGGCCACCA-ATAAA 63813 Score = 89.7 bits (98), Expect = 8e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 198935 GGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAG 198994 ||| ||||||||||||||||||||||| ||||||||||||| | |||| ||||||| || Sbjct 64479 GGCTCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAAG 64420 Query 198995 TCCAGTAGG 199003 ||||| ||| Sbjct 64419 TCCAGCAGG 64411 >seq2410 Length=3205 Score = 109 bits (120), Expect = 8e-19 Identities = 74/82 (90%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 198936 GCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAGT 198995 |||||||||||||||||||||||||| ||||||||||||| | |||| ||||||| ||| Sbjct 951 GCCCCTTAGCTCAGTTGGTTAGAGCAAACGACTCATAATCGTTAGGTCGCTGGTTCAAGT 1010 Query 198996 CCAGTAGGGGCCACCAGATAAA 199017 |||| ||||||||||| ||||| Sbjct 1011 CCAGCAGGGGCCACCA-ATAAA 1031 Score = 95.1 bits (104), Expect = 2e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 198931 ATTTGGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTT 198990 || || ||||||||||||||||||||||||| ||||||||||||| |||| |||||| Sbjct 2298 ATATGCCCCCTTAGCTCAGTTGGTTAGAGCATACGACTCATAATCGTCAGGTCGCTGGTT 2357 Query 198991 CGAGTCCAGTAGGGGCCACCAG 199012 | ||||||| ||| | |||||| Sbjct 2358 CAAGTCCAGCAGGAGGCACCAG 2379 Score = 89.7 bits (98), Expect = 8e-13 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 198937 CCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAGTC 198996 ||||||||||||||||||||||||| ||||||||||||| | |||| ||||||| |||| Sbjct 1783 CCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAAGTC 1842 Query 198997 CAGTAGG 199003 ||| ||| Sbjct 1843 CAGCAGG 1849 Score = 87.8 bits (96), Expect = 3e-12 Identities = 73/88 (83%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 198604 ATATAAATTGCGCTGTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCAC 198663 |||||||| ||| ||||||||||||||||||||||||| ||||||| || ||||| Sbjct 865 ATATAAAT-GCGTTGTTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCAT 923 Query 198664 TGGTTCGAATCCAGTACGGCGCACCACG 198691 ||||||||||| ||| ||| |||||| Sbjct 924 AGGTTCGAATCCTATACAGCGTACCACG 951 >seq4088 Length=5036 Score = 96.9 bits (106), Expect = 5e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 198612 TGCGCTGTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCACTGGTTCGA 198671 |||||||||||||||||||||||||||||| ||||||| || |||| ||||||||| Sbjct 4247 TGCGCTGTTAGCTCAGTTGGATAGAGCAACCGCCTTCTAAGCGGTAGGTCGCTGGTTCGA 4306 Query 198672 ATCCAGTACGGCGCACCA 198689 ||||| ||||||||||| Sbjct 4307 GTCCAGCACGGCGCACCA 4324 >seq2305 Length=5865 Score = 84.2 bits (92), Expect = 3e-11 Identities = 51/54 (94%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 198870 TACAGCTATCAGCTCACCGTTGAAAAAATACGGATAAGTCGGCTCGACTAAAGA 198923 ||||||||||||||||||||||||| |||||||| |||| |||||||||||||| Sbjct 3706 TACAGCTATCAGCTCACCGTTGAAAGAATACGGACAAGTAGGCTCGACTAAAGA 3759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741161834142120