Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_019538.1
Length=231743
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 147 3e-30
seq1262 111 2e-19
seq2410 109 8e-19
seq4088 96.9 5e-15
seq2305 84.2 3e-11
>seq2789
Length=15484
Score = 147 bits (162), Expect = 3e-30
Identities = 533/810 (66%), Gaps = 38/810 (5%)
Strand=Plus/Plus
Query 115569 ATAGTCAATAATTTTCATAGATGTTTTACCCTTCTGATGGA-TTCTTTATGTTTACCTTC 115627
||| || || ||||| || ||| || || || || || | ||||| ||||| ||||
Sbjct 2083 ATACTCCATTATTTTT-TAAATGCTTAACTCTACTT-TGAACTTCTTCTTGTTTTCCTTT 2140
Query 115628 GTTCAACGGACGTTTTTCTACATCACCAAGATATCCACAAACTCTACGCTTAACATCCAA 115687
|| ||||| | | || ||| | ||||||||| ||||| | | ||| |
Sbjct 2141 ATTAAACGGCCTTGAATCAGGGCTACCTAAATATCCACATACTCTTCTTATCACAGATAC 2200
Query 115688 TTTACTACCGTCATGGTTCCCACATGATGGACATTCATAACCCTTGGATGTAGGAACCAT 115747
||| || | ||||| || ||||| ||||| | ||||||| ||| | | |
Sbjct 2201 TTTTCTTGCATCATGATTACCACAACTAGGACAAGAAAAACCCTTACTTGTGCAATCAAA 2260
Query 115748 TTCCCCATGATAACCACAATCAAAACACTGGTCGATTGGGGTATTTGTCCCATAATAAGG 115807
||| || | ||| ||||| ||| |||||| ||| ||||| |||||||| |||||||||||
Sbjct 2261 TTCGCCTTTATATCCACATTCATAACACTCGTCAATTGGAGTATTTGTTCCATAATAAGG 2320
Query 115808 GGTATTTTGATACGCAAAATCCCAAACATCTTCGAGTGCCTTTAAGTTATTTTTCATATT 115867
| || ||| |||||||||||||||||| | ||| || | || ||| |||||||
Sbjct 2321 CACAAATTTATAACTAAAATCCCAAACATCTTCTAATGCTTTAATATTTTTTCTCATATT 2380
Query 115868 TGGAAATTCGCCATATGAAATAAAACCACCTTTCGAATATGTAATGAAAT-CTCGTTCAA 115926
||| |||| || || ||||||| ||||| || | | || | || || | |||||
Sbjct 2381 AGGATATTCACCGTAACAAATAAAGCCACCATTTGCAAAT-TCTGGATATGATTTTTCAA 2439
Query 115927 ACAGGATCTTGTGGTATGGGT---CTGTTTTATACTCAACGTCAAGATGGAAACTATTCG 115983
| || || || | ||||| | ||| ||| | ||| || | ||||||||||| |
Sbjct 2440 AAAGAATTTTTTCATATGGATTTACTGATTT---TTTAACATCCAAGTGGAAACTATTTG 2496
Query 115984 TGTAAT-ATCCTTTTTCATGA-ACCAT--ATGAGG--ATATTTCGTTTCGTCGATATCAA 116037
| |||| || ||| | | | ||| | || | | | ||| ||| || | ||
Sbjct 2497 TATAATAATTCTTGTCTGTAACACCTTTAATAATGCCAAATTCTTTTTTATCTA-ATTGG 2555
Query 116038 CAAAA-CGCTTACAAAGAGATTCTGATGGTGTTCCATATAATGAAAATGCAAACCCAGTT 116096
||||| | | ||||||| ||| ||| || | |||||| ||| || | || |||
Sbjct 2556 CAAAATCTATCACAAAGATTTTCACTTGGCGTGCTATATAAACTAAAACCATATCCTGTT 2615
Query 116097 TCATCTGTCCACCGGTCTGTTATATATTTCATCTTTCGAAGAATTGA-AATACAAAATTC 116155
|||| | |||| | ||| | | | | | ||| || ||| | ||| ||||||||
Sbjct 2616 TCATTTTTCCAGCTATCTACTGCCTCTCTTAATTTTTTAACAATAAATAATCCAAAATTC 2675
Query 116156 TTTCTTTTCTTCATTTCCGAAAATATGAGAATCGTCATTGAATTTCACA-ATTTCACT-- 116212
||| || |||||||| | || ||||| | | ||| | | ||| | ||| || |
Sbjct 2676 TTT-TTATCTTCATTGTCAAACATATG----TTCTGATTCACTATCAAACATTGCATTAA 2730
Query 116213 -TACTTCATGCAAACCAATATATCCACAGGAAACGGAAGAACGTCCGTTTTGGAAAAGAG 116271
| |||||| | || ||||| || | |||| || | | ||| |||| ||||
Sbjct 2731 CTGCTTCATTTATTCCTATATAGCCTAATGAAATTGATGCTCTTCCATTTTTAAAAATTT 2790
Query 116272 GATATATCTCATCATTTGCGTTTAAACGAGCTACTGCGC-----CATTCA-TATACAATA 116325
| || ||||| | || | |||| | || | ||| | |||| |||||||||
Sbjct 2791 CAATAATATCATCTTCTG-GATTAA--GTCTTATTCCGCAAGCACCTTCAGTATACAATA 2847
Query 116326 TGGGGGCACACGATGCTTTAACACCTTTGA 116355
|||||||| | ||||| ||||||||||
Sbjct 2848 TGGGGGCAACCTTAGCTTTTACACCTTTGA 2877
>seq1262
Length=72559
Score = 111 bits (122), Expect = 2e-19
Identities = 75/83 (90%), Gaps = 1/83 (1%)
Strand=Plus/Minus
Query 198935 GGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAG 198994
||||||||||||||||||||||||||| ||||||||||||| | |||| ||||||| ||
Sbjct 63894 GGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAAG 63835
Query 198995 TCCAGTAGGGGCCACCAGATAAA 199017
||||| ||||||||||| |||||
Sbjct 63834 TCCAGCAGGGGCCACCA-ATAAA 63813
Score = 89.7 bits (98), Expect = 8e-13
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 198935 GGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAG 198994
||| ||||||||||||||||||||||| ||||||||||||| | |||| ||||||| ||
Sbjct 64479 GGCTCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAAG 64420
Query 198995 TCCAGTAGG 199003
||||| |||
Sbjct 64419 TCCAGCAGG 64411
>seq2410
Length=3205
Score = 109 bits (120), Expect = 8e-19
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 198936 GCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAGT 198995
|||||||||||||||||||||||||| ||||||||||||| | |||| ||||||| |||
Sbjct 951 GCCCCTTAGCTCAGTTGGTTAGAGCAAACGACTCATAATCGTTAGGTCGCTGGTTCAAGT 1010
Query 198996 CCAGTAGGGGCCACCAGATAAA 199017
|||| ||||||||||| |||||
Sbjct 1011 CCAGCAGGGGCCACCA-ATAAA 1031
Score = 95.1 bits (104), Expect = 2e-14
Identities = 70/82 (85%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 198931 ATTTGGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTT 198990
|| || ||||||||||||||||||||||||| ||||||||||||| |||| ||||||
Sbjct 2298 ATATGCCCCCTTAGCTCAGTTGGTTAGAGCATACGACTCATAATCGTCAGGTCGCTGGTT 2357
Query 198991 CGAGTCCAGTAGGGGCCACCAG 199012
| ||||||| ||| | ||||||
Sbjct 2358 CAAGTCCAGCAGGAGGCACCAG 2379
Score = 89.7 bits (98), Expect = 8e-13
Identities = 60/67 (90%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 198937 CCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCGAGTC 198996
||||||||||||||||||||||||| ||||||||||||| | |||| ||||||| ||||
Sbjct 1783 CCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAAGTC 1842
Query 198997 CAGTAGG 199003
||| |||
Sbjct 1843 CAGCAGG 1849
Score = 87.8 bits (96), Expect = 3e-12
Identities = 73/88 (83%), Gaps = 1/88 (1%)
Strand=Plus/Plus
Query 198604 ATATAAATTGCGCTGTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCAC 198663
|||||||| ||| ||||||||||||||||||||||||| ||||||| || |||||
Sbjct 865 ATATAAAT-GCGTTGTTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCAT 923
Query 198664 TGGTTCGAATCCAGTACGGCGCACCACG 198691
||||||||||| ||| ||| ||||||
Sbjct 924 AGGTTCGAATCCTATACAGCGTACCACG 951
>seq4088
Length=5036
Score = 96.9 bits (106), Expect = 5e-15
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 198612 TGCGCTGTTAGCTCAGTTGGATAGAGCAACGTTCTTCTAAAGCGTGGGTCACTGGTTCGA 198671
|||||||||||||||||||||||||||||| ||||||| || |||| |||||||||
Sbjct 4247 TGCGCTGTTAGCTCAGTTGGATAGAGCAACCGCCTTCTAAGCGGTAGGTCGCTGGTTCGA 4306
Query 198672 ATCCAGTACGGCGCACCA 198689
||||| |||||||||||
Sbjct 4307 GTCCAGCACGGCGCACCA 4324
>seq2305
Length=5865
Score = 84.2 bits (92), Expect = 3e-11
Identities = 51/54 (94%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 198870 TACAGCTATCAGCTCACCGTTGAAAAAATACGGATAAGTCGGCTCGACTAAAGA 198923
||||||||||||||||||||||||| |||||||| |||| ||||||||||||||
Sbjct 3706 TACAGCTATCAGCTCACCGTTGAAAGAATACGGACAAGTAGGCTCGACTAAAGA 3759
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741161834142120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |