Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_019541.1 Length=45364 Score E Sequences producing significant alignments: (Bits) Value seq30549 206 8e-49 >seq30549 Length=45900 Score = 206 bits (228), Expect = 8e-49 Identities = 326/467 (70%), Gaps = 0/467 (0%) Strand=Plus/Plus Query 27794 GCTGGACACATGGCTGGTTTATTAACAGTAGGTTCAGCCATTTCAAAGATGGATACATAT 27853 || ||| ||||||| || | | || || || |||| || || || ||| | ||| Sbjct 18689 GCCGGATACATGGCAGGCGTGGTCACTGTGGGCGCAGCAATCAACAAAATTGATGCTTAT 18748 Query 27854 ACTGGATTACAAAATCGCCTTAAGTTAGTCACTAACAATCAAGTTGAACTAAATAAAGCA 27913 ||| || ||||| ||| | || | ||||| || || ||||| ||||| || Sbjct 18749 ACTAACTTGCAAAACCGCTTAAAACTTGTCACCAATTCGCAGCAAGAACTTAATAAGGCG 18808 Query 27914 ACGGAAGACACTTTCCGAATTGCTCAAAAAACCTATTCAGCATGGGATTCTGTTCTACAG 27973 | | | ||||| ||| | ||||| |||| ||| || |||||| | || |||| Sbjct 18809 ATGAATGACACGTTCGGGATTGCACAAACAACACGCCAAGAATGGGAAACAGTAACACAG 18868 Query 27974 GTCTACCAGCGTTTTAGTGATAATGCCAAAACTTTAAACCTCACAATGGATGACACTGCT 28033 || || ||||| || ||||| ||||| ||||| | |||||||||| | ||||| Sbjct 18869 GTTTATCAGCGATTCAGTGACAATGCAAAAACGCTCGGAATCACAATGGAGCAAACTGCA 18928 Query 28034 CGACTAACTGAAACAGTATCAAAAGCAGTTGCGATCAGTGGTGCAAGCGCAGAAGCTGCT 28093 ||| |||||||| || || ||||| |||||| | ||||| | |||||| | || Sbjct 18929 AAACTTACTGAAACCGTGTCGAAAGCCGTTGCGGTATCGGGTGCTACAGCAGAATCAGCA 18988 Query 28094 GATGCAGCTTTAGTACAATTTGGGCAGGCTTTGGCAAGCGGTACATTACGTGGTGAAGAA 28153 | || || | || |||||||||||||| || || ||| |||||||| || |||||| Sbjct 18989 AACGCCGCACTTGTTCAATTTGGGCAGGCATTAGCGTCCGGCACATTACGCGGCGAAGAA 19048 Query 28154 CTCAACTCAGTTATGGAACAAACACCAGCTCTAGCAAAGGCTATTGCTCAAGGCATGGGG 28213 || ||||| || ||||| ||||| || || || ||||| |||||||| ||| ||||| Sbjct 19049 CTAAACTCCGTCATGGAGCAAACGCCTGCACTTGCAAAAGCTATTGCAACAGGTATGGGC 19108 Query 28214 ATCACCGTAGGAGAGTTGCGTTCAGTTGCGGCTGAAGGAAAAATTAC 28260 | || |||| | || || |||||||| || ||||| ||||| || Sbjct 19109 TTAACTATAGGCCAATTACGCTCAGTTGCCGCAGAAGGGAAAATCAC 19155 Score = 98.7 bits (108), Expect = 3e-16 Identities = 156/220 (71%), Gaps = 14/220 (6%) Strand=Plus/Plus Query 24511 TCAAAATGGTGTGAATACAAGGGGGTTGATGGCGAAGTACAGGCAGAGTTCAAAGTCCGT 24570 || |||||||||||||| || | | |||||||||||| | || | ||||||| ||| Sbjct 17708 TCGAAATGGTGTGAATATAAAGACGCTGATGGCGAAGTTCTTGCCAAAATCAAAGTACGT 17767 Query 24571 GGTATCGCCTATAAACCTTTTCAGGTAGCAATTGAACGAGCCGGAAATCAGATTTCATCC 24630 || || | ||||| |||| |||||| ||| | |||||||| ||| || || || Sbjct 17768 GGCATTTCGTATAAGCCTTATCAGGTCGCAGTAGAACGAGCGCAAAACCAAATCGCACAG 17827 Query 24631 AAAGGCTATGATGTGATGGTCA----AAGATGAAAATGCCAAGCTTTACCATGAATTGTT 24686 ||||||| ||| | ||| || ||| | ||| | ||| || | |||||||||| | Sbjct 17828 AAAGGCTTTGACG---TGGACACCGCAAG-CGCAAACGACAAACTATTCCATGAATTGCT 17883 Query 24687 AATGGATGCGTGTGCTGC---CCACTTAATTGAAGACTGG 24723 | | ||||| |||||| || || |||||||| ||| Sbjct 17884 ACTTGATGC---TGCTGCGTGTCATTTGATTGAAGATTGG 17920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144989721574988