Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_019541.1
Length=45364
Score E
Sequences producing significant alignments: (Bits) Value
seq30549 206 8e-49
>seq30549
Length=45900
Score = 206 bits (228), Expect = 8e-49
Identities = 326/467 (70%), Gaps = 0/467 (0%)
Strand=Plus/Plus
Query 27794 GCTGGACACATGGCTGGTTTATTAACAGTAGGTTCAGCCATTTCAAAGATGGATACATAT 27853
|| ||| ||||||| || | | || || || |||| || || || ||| | |||
Sbjct 18689 GCCGGATACATGGCAGGCGTGGTCACTGTGGGCGCAGCAATCAACAAAATTGATGCTTAT 18748
Query 27854 ACTGGATTACAAAATCGCCTTAAGTTAGTCACTAACAATCAAGTTGAACTAAATAAAGCA 27913
||| || ||||| ||| | || | ||||| || || ||||| ||||| ||
Sbjct 18749 ACTAACTTGCAAAACCGCTTAAAACTTGTCACCAATTCGCAGCAAGAACTTAATAAGGCG 18808
Query 27914 ACGGAAGACACTTTCCGAATTGCTCAAAAAACCTATTCAGCATGGGATTCTGTTCTACAG 27973
| | | ||||| ||| | ||||| |||| ||| || |||||| | || ||||
Sbjct 18809 ATGAATGACACGTTCGGGATTGCACAAACAACACGCCAAGAATGGGAAACAGTAACACAG 18868
Query 27974 GTCTACCAGCGTTTTAGTGATAATGCCAAAACTTTAAACCTCACAATGGATGACACTGCT 28033
|| || ||||| || ||||| ||||| ||||| | |||||||||| | |||||
Sbjct 18869 GTTTATCAGCGATTCAGTGACAATGCAAAAACGCTCGGAATCACAATGGAGCAAACTGCA 18928
Query 28034 CGACTAACTGAAACAGTATCAAAAGCAGTTGCGATCAGTGGTGCAAGCGCAGAAGCTGCT 28093
||| |||||||| || || ||||| |||||| | ||||| | |||||| | ||
Sbjct 18929 AAACTTACTGAAACCGTGTCGAAAGCCGTTGCGGTATCGGGTGCTACAGCAGAATCAGCA 18988
Query 28094 GATGCAGCTTTAGTACAATTTGGGCAGGCTTTGGCAAGCGGTACATTACGTGGTGAAGAA 28153
| || || | || |||||||||||||| || || ||| |||||||| || ||||||
Sbjct 18989 AACGCCGCACTTGTTCAATTTGGGCAGGCATTAGCGTCCGGCACATTACGCGGCGAAGAA 19048
Query 28154 CTCAACTCAGTTATGGAACAAACACCAGCTCTAGCAAAGGCTATTGCTCAAGGCATGGGG 28213
|| ||||| || ||||| ||||| || || || ||||| |||||||| ||| |||||
Sbjct 19049 CTAAACTCCGTCATGGAGCAAACGCCTGCACTTGCAAAAGCTATTGCAACAGGTATGGGC 19108
Query 28214 ATCACCGTAGGAGAGTTGCGTTCAGTTGCGGCTGAAGGAAAAATTAC 28260
| || |||| | || || |||||||| || ||||| ||||| ||
Sbjct 19109 TTAACTATAGGCCAATTACGCTCAGTTGCCGCAGAAGGGAAAATCAC 19155
Score = 98.7 bits (108), Expect = 3e-16
Identities = 156/220 (71%), Gaps = 14/220 (6%)
Strand=Plus/Plus
Query 24511 TCAAAATGGTGTGAATACAAGGGGGTTGATGGCGAAGTACAGGCAGAGTTCAAAGTCCGT 24570
|| |||||||||||||| || | | |||||||||||| | || | ||||||| |||
Sbjct 17708 TCGAAATGGTGTGAATATAAAGACGCTGATGGCGAAGTTCTTGCCAAAATCAAAGTACGT 17767
Query 24571 GGTATCGCCTATAAACCTTTTCAGGTAGCAATTGAACGAGCCGGAAATCAGATTTCATCC 24630
|| || | ||||| |||| |||||| ||| | |||||||| ||| || || ||
Sbjct 17768 GGCATTTCGTATAAGCCTTATCAGGTCGCAGTAGAACGAGCGCAAAACCAAATCGCACAG 17827
Query 24631 AAAGGCTATGATGTGATGGTCA----AAGATGAAAATGCCAAGCTTTACCATGAATTGTT 24686
||||||| ||| | ||| || ||| | ||| | ||| || | |||||||||| |
Sbjct 17828 AAAGGCTTTGACG---TGGACACCGCAAG-CGCAAACGACAAACTATTCCATGAATTGCT 17883
Query 24687 AATGGATGCGTGTGCTGC---CCACTTAATTGAAGACTGG 24723
| | ||||| |||||| || || |||||||| |||
Sbjct 17884 ACTTGATGC---TGCTGCGTGTCATTTGATTGAAGATTGG 17920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 144989721574988
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |