Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_019543.1 Length=160646 Score E Sequences producing significant alignments: (Bits) Value seq2789 111 2e-19 seq27881 84.2 2e-11 seq6803 84.2 2e-11 >seq2789 Length=15484 Score = 111 bits (122), Expect = 2e-19 Identities = 304/457 (67%), Gaps = 8/457 (2%) Strand=Plus/Plus Query 36708 AACCTCGGCTTGTTTGCCTTTATTGAATCCTCTCGCCAACGGAGC-ACCAAGATACCCAC 36766 ||| || ||||||| |||||||| || || | | | | || ||| | ||| |||| Sbjct 2120 AACTTCTTCTTGTTTTCCTTTATTAAACGGCCTTGA-ATCAGGGCTACCTAAATATCCAC 2178 Query 36767 AAACTCTTCGTATAACTGACATCTTTGACGAATCGTGGTTACCGCAGCTTGGACAACTAA 36826 | ||||||| ||| || || | ||| | ||| || ||||| || || |||||| || Sbjct 2179 ATACTCTTCTTATCACAGATACTTTTCTTGCATCATGATTACCACAACTAGGACAAGAAA 2238 Query 36827 ATCCTTTCGAGGTGCATTTGAATTCACCGTCAAAACCACATTCATAACATTTATCGACCG 36886 | || || ||||| | ||||| || | | | |||||||||||||| | || | | Sbjct 2239 AACCCTTACTTGTGCAATCAAATTCGCCTTTATATCCACATTCATAACACTCGTCAATTG 2298 Query 36887 GTGTGTTTGTTCCAAAAT-AGGAAAGATTTTCCATCGCGTAATCCCAAATTTGCTCAAGG 36945 | || ||||||||| ||| ||| | | ||| | | ||||||||| | || | Sbjct 2299 GAGTATTTGTTCCATAATAAGGCACAAATTTATAAC-TAAAATCCCAAACATCTTCTAAT 2357 Query 36946 GCCTCGAGATTGTTTCGCATATTGGGTAGTTCGACATAGCTGATATGCCCACCTGATGC- 37004 || | | ||| |||| |||||| || ||| | || | ||| ||||| ||| Sbjct 2358 GCTTTAATATTTTTTCTCATATTAGGATATTCACCGTAACAAATAAAGCCACCATTTGCA 2417 Query 37005 AATCCAATGGA-ATTCTTTTTCGGCATCTATTTTGTCATATGGGTTCAACTCGGCATCGA 37063 ||| | |||| || |||||| | ||||| |||||||| || | | | Sbjct 2418 AATTC--TGGATATGATTTTTCAAAAAGAATTTTTTCATATGGATTTACTGATTTTTTAA 2475 Query 37064 CAGGAATATGGAAGCTATTTGTATACCAATCCTTGTCTGTAATTCCTTCGATAACGCCAT 37123 || | ||||| ||||||||||| ||| ||||||||||| |||| |||| |||| Sbjct 2476 CATCCAAGTGGAAACTATTTGTATAATAATTCTTGTCTGTAACACCTTTAATAATGCCAA 2535 Query 37124 ATTTCTTGCGATCCAACTGGCAGAATCTGTCGCACAG 37160 ||| || ||| || ||||| ||||| || || || Sbjct 2536 ATTCTTTTTTATCTAATTGGCAAAATCTATCACAAAG 2572 Score = 86.0 bits (94), Expect = 6e-12 Identities = 161/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 37698 AATGTCAGGGTACATTCGCTTGGCTGAACATTCCAGAGCAAGGTGTTTAATTTCATAGTT 37757 ||| ||||| |||||||| | | ||||||||| || || || ||||| || ||||| || Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 37758 TGGATCTCCAGGATTTAAGTTTATACCAGCTTCCATGAACATAACGAGTTTTGGAAATAC 37817 ||||| | | | || ||| | || ||| ||| | ||| |||||||||||||| Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATAC 3250 Query 37818 TGGCGTGATGCCATTCTTTCCAAGACCCTTGATTCGTACTTTCAAAATAGCTTTTTGAAT 37877 || ||| | ||| ||||| | || || |||| | | || || | ||||||||| Sbjct 3251 TGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAAT 3310 Query 37878 TTCTTTTTCGAACCAGTTAGTTCCCATCCCAAATGTAATTGTCACAAATGGAGTTTG 37934 | | |||| || |||| | ||||| || || |||||||| ||||| Sbjct 3311 TAATCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTG 3367 >seq27881 Length=1164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/91 (81%), Gaps = 1/91 (1%) Strand=Plus/Minus Query 65182 TTTGGTGCAAGTAGTGGGACTCGAACCCACAATCC-CGAAGGCGGAAGATTTTAAGTCTC 65240 |||||| | |||| || ||||||||| || ||||| | | ||||| |||||||||||||| Sbjct 786 TTTGGTACCAGTAATGAGACTCGAACTCATAATCCACTAGGGCGGGAGATTTTAAGTCTC 727 Query 65241 CAGTGTATACCAAATTCCACCATACTTGCAT 65271 | |||||| | | |||||||| ||| |||| Sbjct 726 CTGTGTATTTCCATTTCCACCACACTGGCAT 696 >seq6803 Length=1108 Score = 84.2 bits (92), Expect = 2e-11 Identities = 74/91 (81%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 65182 TTTGGTGCAAGTAGTGGGACTCGAACCCACAATCC-CGAAGGCGGAAGATTTTAAGTCTC 65240 |||||| | |||| || ||||||||| || ||||| | | ||||| |||||||||||||| Sbjct 127 TTTGGTACCAGTAATGAGACTCGAACTCATAATCCACTAGGGCGGGAGATTTTAAGTCTC 186 Query 65241 CAGTGTATACCAAATTCCACCATACTTGCAT 65271 | |||||| | | |||||||| ||| |||| Sbjct 187 CTGTGTATTTCCATTTCCACCACACTGGCAT 217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513739733772240