Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_019543.1
Length=160646
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 111 2e-19
seq27881 84.2 2e-11
seq6803 84.2 2e-11
>seq2789
Length=15484
Score = 111 bits (122), Expect = 2e-19
Identities = 304/457 (67%), Gaps = 8/457 (2%)
Strand=Plus/Plus
Query 36708 AACCTCGGCTTGTTTGCCTTTATTGAATCCTCTCGCCAACGGAGC-ACCAAGATACCCAC 36766
||| || ||||||| |||||||| || || | | | | || ||| | ||| ||||
Sbjct 2120 AACTTCTTCTTGTTTTCCTTTATTAAACGGCCTTGA-ATCAGGGCTACCTAAATATCCAC 2178
Query 36767 AAACTCTTCGTATAACTGACATCTTTGACGAATCGTGGTTACCGCAGCTTGGACAACTAA 36826
| ||||||| ||| || || | ||| | ||| || ||||| || || |||||| ||
Sbjct 2179 ATACTCTTCTTATCACAGATACTTTTCTTGCATCATGATTACCACAACTAGGACAAGAAA 2238
Query 36827 ATCCTTTCGAGGTGCATTTGAATTCACCGTCAAAACCACATTCATAACATTTATCGACCG 36886
| || || ||||| | ||||| || | | | |||||||||||||| | || | |
Sbjct 2239 AACCCTTACTTGTGCAATCAAATTCGCCTTTATATCCACATTCATAACACTCGTCAATTG 2298
Query 36887 GTGTGTTTGTTCCAAAAT-AGGAAAGATTTTCCATCGCGTAATCCCAAATTTGCTCAAGG 36945
| || ||||||||| ||| ||| | | ||| | | ||||||||| | || |
Sbjct 2299 GAGTATTTGTTCCATAATAAGGCACAAATTTATAAC-TAAAATCCCAAACATCTTCTAAT 2357
Query 36946 GCCTCGAGATTGTTTCGCATATTGGGTAGTTCGACATAGCTGATATGCCCACCTGATGC- 37004
|| | | ||| |||| |||||| || ||| | || | ||| ||||| |||
Sbjct 2358 GCTTTAATATTTTTTCTCATATTAGGATATTCACCGTAACAAATAAAGCCACCATTTGCA 2417
Query 37005 AATCCAATGGA-ATTCTTTTTCGGCATCTATTTTGTCATATGGGTTCAACTCGGCATCGA 37063
||| | |||| || |||||| | ||||| |||||||| || | | |
Sbjct 2418 AATTC--TGGATATGATTTTTCAAAAAGAATTTTTTCATATGGATTTACTGATTTTTTAA 2475
Query 37064 CAGGAATATGGAAGCTATTTGTATACCAATCCTTGTCTGTAATTCCTTCGATAACGCCAT 37123
|| | ||||| ||||||||||| ||| ||||||||||| |||| |||| ||||
Sbjct 2476 CATCCAAGTGGAAACTATTTGTATAATAATTCTTGTCTGTAACACCTTTAATAATGCCAA 2535
Query 37124 ATTTCTTGCGATCCAACTGGCAGAATCTGTCGCACAG 37160
||| || ||| || ||||| ||||| || || ||
Sbjct 2536 ATTCTTTTTTATCTAATTGGCAAAATCTATCACAAAG 2572
Score = 86.0 bits (94), Expect = 6e-12
Identities = 161/237 (68%), Gaps = 0/237 (0%)
Strand=Plus/Plus
Query 37698 AATGTCAGGGTACATTCGCTTGGCTGAACATTCCAGAGCAAGGTGTTTAATTTCATAGTT 37757
||| ||||| |||||||| | | ||||||||| || || || ||||| || ||||| ||
Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190
Query 37758 TGGATCTCCAGGATTTAAGTTTATACCAGCTTCCATGAACATAACGAGTTTTGGAAATAC 37817
||||| | | | || ||| | || ||| ||| | ||| ||||||||||||||
Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATAC 3250
Query 37818 TGGCGTGATGCCATTCTTTCCAAGACCCTTGATTCGTACTTTCAAAATAGCTTTTTGAAT 37877
|| ||| | ||| ||||| | || || |||| | | || || | |||||||||
Sbjct 3251 TGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAAT 3310
Query 37878 TTCTTTTTCGAACCAGTTAGTTCCCATCCCAAATGTAATTGTCACAAATGGAGTTTG 37934
| | |||| || |||| | ||||| || || |||||||| |||||
Sbjct 3311 TAATCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTG 3367
>seq27881
Length=1164
Score = 84.2 bits (92), Expect = 2e-11
Identities = 74/91 (81%), Gaps = 1/91 (1%)
Strand=Plus/Minus
Query 65182 TTTGGTGCAAGTAGTGGGACTCGAACCCACAATCC-CGAAGGCGGAAGATTTTAAGTCTC 65240
|||||| | |||| || ||||||||| || ||||| | | ||||| ||||||||||||||
Sbjct 786 TTTGGTACCAGTAATGAGACTCGAACTCATAATCCACTAGGGCGGGAGATTTTAAGTCTC 727
Query 65241 CAGTGTATACCAAATTCCACCATACTTGCAT 65271
| |||||| | | |||||||| ||| ||||
Sbjct 726 CTGTGTATTTCCATTTCCACCACACTGGCAT 696
>seq6803
Length=1108
Score = 84.2 bits (92), Expect = 2e-11
Identities = 74/91 (81%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 65182 TTTGGTGCAAGTAGTGGGACTCGAACCCACAATCC-CGAAGGCGGAAGATTTTAAGTCTC 65240
|||||| | |||| || ||||||||| || ||||| | | ||||| ||||||||||||||
Sbjct 127 TTTGGTACCAGTAATGAGACTCGAACTCATAATCCACTAGGGCGGGAGATTTTAAGTCTC 186
Query 65241 CAGTGTATACCAAATTCCACCATACTTGCAT 65271
| |||||| | | |||||||| ||| ||||
Sbjct 187 CTGTGTATTTCCATTTCCACCACACTGGCAT 217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 513739733772240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |