Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_019909.1 Length=168809 Score E Sequences producing significant alignments: (Bits) Value seq1262 96.9 4e-15 seq2410 95.1 1e-14 >seq1262 Length=72559 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 74901 TTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTAAC 74960 |||||||||| | ||||| ||||||||| |||| | ||||||||||||| ||||||||| Sbjct 63817 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAAC 63876 Query 74961 CATCTGAGCTAAAGGGCC 74978 || ||||||||| ||||| Sbjct 63877 CAACTGAGCTAAGGGGCC 63894 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 74914 CTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTAACCATCTGAGCTAAA 74973 ||||| ||||||||| |||| | ||||||||||||| ||||||||||| ||||||||| Sbjct 64415 CTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTGTGCTCTAACCAACTGAGCTAAG 64474 Query 74974 GGGCCTTTGTTTA 74986 | |||||| |||| Sbjct 64475 GAGCCTTTATTTA 64487 >seq2410 Length=3205 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 74901 TTGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTAAC 74960 |||||||||| | ||||| ||||||||| |||| | ||||||||||||| ||||||||| Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968 Query 74961 CATCTGAGCTAAAGGGC 74977 || ||||||||| |||| Sbjct 967 CAACTGAGCTAAGGGGC 951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539851195652760