Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq2698 147 2e-30 seq1262 100 3e-16 >seq2698 Length=11445 Score = 147 bits (162), Expect = 2e-30 Identities = 144/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 50839 CCAACTGTTAAGGTGGAAGGTGGACAGCATTTAAACGTAAACGTGTTGCGCCGCGAAACT 50898 || ||||| | || ||||||||||| |||||||| |||||||| | || ||||| Sbjct 5309 CCTACTGTAAGAGTTGAAGGTGGACAACATTTAAATGTAAACGTTCTTCGAAAAGAAACA 5368 Query 50899 CTCCTGGATGCGGTTGAACATCCTGAAAAATACCCACAGTTAACGATCCGTGTTTCTGGT 50958 || || ||||| || |||||||||||||||||||| |||||||| || | ||||| || Sbjct 5369 CTTCTTGATGCAGTAGAACATCCTGAAAAATACCCGCAGTTAACAATTAGGGTTTCAGGA 5428 Query 50959 TATGCAGTGCGTTTTAACTCACTGACCCCTGAACAGCAACGCGACGTTATCGCCAGAACC 51018 ||||| || | |||||||| | || |||||||| |||| || ||||| ||||||| Sbjct 5429 TATGCTGTTAGATTTAACTCTTTAACACCTGAACAACAACAAGATGTTATTACCAGAACT 5488 Query 51019 TTTACA 51024 || ||| Sbjct 5489 TTCACA 5494 >seq1262 Length=72559 Score = 100 bits (110), Expect = 3e-16 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 92867 TTTATAAAATTCTTTACCAGACCCATTACAGCTACTGCATTTGGGGGAACGGTTGTTATC 92926 |||||| |||||| |||| |||||||| ||| ||||| || ||||| | | || Sbjct 20 TTTATATCGTTCTTTTCCAGTTCCATTACAAGAACTACATTTTGGTGAACGATGACTGTC 79 Query 92927 ATACCGCCCCGAACCGTTACATGCAACACATTTCCTTAATTTCCAGCCATACACGAACCT 92986 ||||| || ||||||||||| ||||||||||| || ||||| | ||||| | || | Sbjct 80 ATACCTTCCAGAACCGTTACAAGCAACACATTTTCTCAATTTAAATCCATATTCAAATTT 139 Query 92987 CATGTAATAATCGGTTCGTGCGGCCTTGCGTTCATGGAAATTCATGCTTT 93036 | |||| | |||| | | | || | |||||| ||||||||||||| Sbjct 140 AAAATAATGGTTCGTTCTTTCTTCTTTTCTTTCATGAAAATTCATGCTTT 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557777035708920