Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1470 158 8e-33 seq1985 141 6e-28 seq13975 120 2e-21 >seq1470 Length=5781 Score = 158 bits (174), Expect = 8e-33 Identities = 339/497 (68%), Gaps = 15/497 (3%) Strand=Plus/Plus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447 || ||||| |||||||| || |||||||| | | || || ||||||||| ||| || Sbjct 2362 GTTGAAATTATTGCCAACGATCAAGGTAACCGTATCACTCCCTCATATGTTGGTTTCACA 2421 Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 |||| ||||| | | ||||| ||||| || ||| |||| | || | | ||||| | Sbjct 2422 AGTGAAGGTGAACGTTTGATTGGTGATGCCGCCAAAAATCA-GTTGACCACAAATCCAGA 2480 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564 ||||| | || ||||| || | |||||||||||| | | ||||| ||| ||| || Sbjct 2481 GAATACAGTATTCGATGCCAAGCGTTTGATTGGTCGTGAATGGAATGATGCCAATGTGCA 2540 Query 474565 ATCTGATATGCGTCATTGGCCTTTTAAGGTGAT--AAATGTTGGTGGTAAACCATATATA 474622 | ||| || | || || || ||||| ||| | || ||| | || Sbjct 2541 ACATGACATCAAATTCTTCCCCTTCAAAGTGATCGAAAAGAACTCC--AAGCCACACATT 2598 Query 474623 GAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGG 474680 ||| ||| | |||| | | ||| ||| |||| ||| |||| || | |||| Sbjct 2599 CAAGTTCAAACTTCTCAGGGTA--CCAAAGTGTTTGCACCTGAAGAAATCTCCGCCATGG 2656 Query 474681 TTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAG-TAACTGATGCA 474739 |||| | |||||||| | ||||| | || ||||| ||||||| | || |||| Sbjct 2657 TTTTGGGTAAAATGAAGGACACCGCTGAAGCCTA-CTTGGGCAAGAAGGTCACCAATGCT 2715 Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799 || | || || || || || ||||| ||| ||||||||||||| || ||||| || || Sbjct 2716 GTGGTCACAGTACCCGCCTACTTTAACGATGCTCAACGTCAAGCCACCAAAGACGCTGGC 2775 Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859 ||||| |||||||||||| | ||||| |||||||| || || || || || | || Sbjct 2776 GTTATTGCTGGTCTTAATGTTATGCGTATCATTAATGAGCCCACCGCTGCTGCCATAGCC 2835 Query 474860 TATGGTCTTGATAAGAA 474876 || ||| | || ||||| Sbjct 2836 TACGGTTTGGACAAGAA 2852 Score = 122 bits (134), Expect = 6e-22 Identities = 312/467 (67%), Gaps = 10/467 (2%) Strand=Plus/Plus Query 475694 GTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTT 475753 || || |||||||| || || || ||||||||| | ||||| ||| || | || || || Sbjct 3277 GTACACGAAATTGTGCTGGTTGGTGGTTCAACACGTATTCCCAAAGTACAACAATTGGTT 3336 Query 475754 TCATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCA 475813 || ||| || || | | | || | || |||||||||||||| || Sbjct 3337 AAGGAATTCTTTGGAGGCAAGGAACCATCTCGTGGTATCAACCCTGATGAAGCTGTGGCC 3396 Query 475814 TATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAAT 475873 ||||| || ||||| ||||| | | | || || ||| || ||| || ||| | | Sbjct 3397 TATGGTGCCGCTGTACAAGCTGGTGTATTGTCTGGTGAA-CAG----GATACTGA-TGCC 3450 Query 475874 ATTGTACTTGTTG-ACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTAT 475932 ||||| ||||||| | || | ||| | | | ||| ||||||| || || || | || Sbjct 3451 ATTGT-CTTGTTGGATGTCAACCCATTGACTATGGGTATTGAAACTGTGGGTGGTGTGAT 3509 Query 475933 GACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCAC 475992 ||| || | ||| | || ||| ||| || || |||||| || | || || || Sbjct 3510 GACCAAATTGATTCCACGTAACACTGTTATTCCCACTAAGAAATCACAAATTTTCTCTAC 3569 Query 475993 TTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCAC 476052 | ||||| | ||||||||||| ||||| ||| | | |||||||||| | | | || Sbjct 3570 TGCCTCTGACCAGCAAACAACTGTCACCATTCAAGTATATGAAGGTGAACGTCCAATGAC 3629 Query 476053 TAAAGATAATAACAAACTTGGAACTTTTAATCTTGA-AGGTATTCCTCCTGCTCCCAGAG 476111 |||||||| || | || | ||| || |||| || ||||| || || || | | Sbjct 3630 CAAAGATAACCACTTGTTGGGTAAATTTGAT-TTGACTGGCATTCCACCAGCACCACGTG 3688 Query 476112 GAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATT 476158 | |||| |||||||| || | ||||| || ||||| || |||||| Sbjct 3689 GTATTCCACAAATTGAGGTATCCTTTGAGATCGATGCTAACGGTATT 3735 >seq1985 Length=11301 Score = 141 bits (156), Expect = 6e-28 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 474654 TTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG--AGCTC 474711 |||| || ||||||||||| | ||||| ||||||||| || | ||| || | Sbjct 1472 TTTCCCCACAACAAATTTCTGCTGAAATTTTAATTAAAATGAAAAAAGCTGCGGAAGAT- 1530 Query 474712 ATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTC 474771 ||| | || | |||| || || || || || ||||||||||| |||||||| ||| | Sbjct 1531 -TATTTAGGCGAGAAAGTTACAGACGCTGTTATAACTGTTCCAGCTTATTTTAACGATGC 1589 Query 474772 TCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTAT 474831 |||| | |||||||| ||||| || || | |||||||||||||||||| | | ||||| Sbjct 1590 TCAAAGGCAAGCAACAAAAGACGCTGGTAAAATTGCAGGTCTTAATGTGCAAAGAATTAT 1649 Query 474832 TAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 ||||||||||| || || |||||||| | |||| Sbjct 1650 AAATGAACCAACTGCTGCTGCACTTGCATTTGGT 1683 Score = 118 bits (130), Expect = 7e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 290827 ACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGC 290886 |||| ||| | || ||| || ||||||||||||||||||||| |||| ||||||||| Sbjct 1683 ACCAAATGCAAGTGCAGCAGCAGTTGGTTCATTTATAATTCTTTGCACATTAAGACCTGC 1624 Query 290887 AATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGT 290946 |||||| | | ||| ||||| || | ||| ||||| ||||||||||| || || || Sbjct 1623 AATTTTACCAGCGTCTTTTGTTGCTTGCCTTTGAGCATCGTTAAAATAAGCTGGAACAGT 1564 Query 290947 AATAACAGCtttttccactttctttttcaaataattttctgccatttgttttatttcTAT 291006 |||||||| | | ||||||| ||||||| ||| || || ||| |||| || Sbjct 1563 TATAACAGCGTCTGTAACTTTCTCGCCTAAATAATCTTCCGCAGCTTTTTTCATTTTAAT 1504 Query 291007 AAGTATTTGTGCGCAAATTTCTT 291029 | |||| || |||||| || Sbjct 1503 TAAAATTTCAGCAGAAATTTGTT 1481 Score = 109 bits (120), Expect = 4e-18 Identities = 251/376 (67%), Gaps = 14/376 (4%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 |||||||||||||| || ||| || || || | |||| | | ||| ||||| Sbjct 2312 AATCCTGATGAAGCAGTGTCATTAGGTGCAGCAATACAAGGTTCAGTATTAACAGGT--- 2368 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 ||||| ||| | | || | ||| |||| ||||| || | || | ||| || Sbjct 2369 --------GAAACAAAAGA-TCTTCTTCTTCTTGATGTAACACCTTTATCTATTGGTATT 2419 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 |||||| | || || | |||||| |||||| | |||||| | || ||| ||| Sbjct 2420 GAAACAATGGGTGGTGTAATGACTGTTCTTATACCTAAAAATACGACAATTCCAA-CAAG 2478 Query 475973 AAATCAA-AAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTT 476031 |||||| |||| || || || | ||||||||||| | ||| || || | || Sbjct 2479 AAATCAGCAAGTGTTCTCTACGGCTGATGATAATCAAAATTCAGTAGGAATTAAAGTATT 2538 Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||| ||||||||| || |||||||| | || |||||| | ||||| Sbjct 2539 CCAAGGCGAAAGAAAACGTTCTTCTGATAATAAATTGTTAGGTGAATTTAATTTAGAAGG 2598 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 ||| |||||||| |||| ||||||||||||||||| ||||||||||| || Sbjct 2599 TATAGACCCTGCTCCACGAGGGACACCTCAAATTGAAGTTACATTTGATATTGACCAGAA 2658 Query 476152 TGGTATTCTTAATGTT 476167 ||||||| | | |||| Sbjct 2659 TGGTATTATCAGTGTT 2674 >seq13975 Length=1469 Score = 120 bits (132), Expect = 2e-21 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||||||||| |||||||| ||||| || ||| ||||| | ||| | ||| |||| || Sbjct 1282 TGCAATTGGAATTGATTTGGGAACCACATACTCCTGTGTTGGTGTCTTTCAACATGGAAA 1341 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 |||||||||||||||||| |||||||| ||| | |||||||| ||||| | || || Sbjct 1342 AGTAGAAATAATTGCCAACGACCAAGGAAATCGTACAACACCCAGTTATGTGGCATTCAC 1401 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 || | || | | | ||||| ||||| || ||| |||||| Sbjct 1402 AGATTCAGAGCGTTTGATTGGTGATGCCGCCAAAAATCAAG 1442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266847357740252