Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq1470 158 8e-33
seq1985 141 6e-28
seq13975 120 2e-21
>seq1470
Length=5781
Score = 158 bits (174), Expect = 8e-33
Identities = 339/497 (68%), Gaps = 15/497 (3%)
Strand=Plus/Plus
Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC- 474447
|| ||||| |||||||| || |||||||| | | || || ||||||||| ||| ||
Sbjct 2362 GTTGAAATTATTGCCAACGATCAAGGTAACCGTATCACTCCCTCATATGTTGGTTTCACA 2421
Query 474448 --TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504
|||| ||||| | | ||||| ||||| || ||| |||| | || | | ||||| |
Sbjct 2422 AGTGAAGGTGAACGTTTGATTGGTGATGCCGCCAAAAATCA-GTTGACCACAAATCCAGA 2480
Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564
||||| | || ||||| || | |||||||||||| | | ||||| ||| ||| ||
Sbjct 2481 GAATACAGTATTCGATGCCAAGCGTTTGATTGGTCGTGAATGGAATGATGCCAATGTGCA 2540
Query 474565 ATCTGATATGCGTCATTGGCCTTTTAAGGTGAT--AAATGTTGGTGGTAAACCATATATA 474622
| ||| || | || || || ||||| ||| | || ||| | ||
Sbjct 2541 ACATGACATCAAATTCTTCCCCTTCAAAGTGATCGAAAAGAACTCC--AAGCCACACATT 2598
Query 474623 GAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGG 474680
||| ||| | |||| | | ||| ||| |||| ||| |||| || | ||||
Sbjct 2599 CAAGTTCAAACTTCTCAGGGTA--CCAAAGTGTTTGCACCTGAAGAAATCTCCGCCATGG 2656
Query 474681 TTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAG-TAACTGATGCA 474739
|||| | |||||||| | ||||| | || ||||| ||||||| | || ||||
Sbjct 2657 TTTTGGGTAAAATGAAGGACACCGCTGAAGCCTA-CTTGGGCAAGAAGGTCACCAATGCT 2715
Query 474740 GTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGA 474799
|| | || || || || || ||||| ||| ||||||||||||| || ||||| || ||
Sbjct 2716 GTGGTCACAGTACCCGCCTACTTTAACGATGCTCAACGTCAAGCCACCAAAGACGCTGGC 2775
Query 474800 AGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCT 474859
||||| |||||||||||| | ||||| |||||||| || || || || || | ||
Sbjct 2776 GTTATTGCTGGTCTTAATGTTATGCGTATCATTAATGAGCCCACCGCTGCTGCCATAGCC 2835
Query 474860 TATGGTCTTGATAAGAA 474876
|| ||| | || |||||
Sbjct 2836 TACGGTTTGGACAAGAA 2852
Score = 122 bits (134), Expect = 6e-22
Identities = 312/467 (67%), Gaps = 10/467 (2%)
Strand=Plus/Plus
Query 475694 GTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTT 475753
|| || |||||||| || || || ||||||||| | ||||| ||| || | || || ||
Sbjct 3277 GTACACGAAATTGTGCTGGTTGGTGGTTCAACACGTATTCCCAAAGTACAACAATTGGTT 3336
Query 475754 TCATCATATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCA 475813
|| ||| || || | | | || | || |||||||||||||| ||
Sbjct 3337 AAGGAATTCTTTGGAGGCAAGGAACCATCTCGTGGTATCAACCCTGATGAAGCTGTGGCC 3396
Query 475814 TATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAATCAGACGAGAAACTAAATAAT 475873
||||| || ||||| ||||| | | | || || ||| || ||| || ||| | |
Sbjct 3397 TATGGTGCCGCTGTACAAGCTGGTGTATTGTCTGGTGAA-CAG----GATACTGA-TGCC 3450
Query 475874 ATTGTACTTGTTG-ACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTAT 475932
||||| ||||||| | || | ||| | | | ||| ||||||| || || || | ||
Sbjct 3451 ATTGT-CTTGTTGGATGTCAACCCATTGACTATGGGTATTGAAACTGTGGGTGGTGTGAT 3509
Query 475933 GACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCAC 475992
||| || | ||| | || ||| ||| || || |||||| || | || || ||
Sbjct 3510 GACCAAATTGATTCCACGTAACACTGTTATTCCCACTAAGAAATCACAAATTTTCTCTAC 3569
Query 475993 TTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCAC 476052
| ||||| | ||||||||||| ||||| ||| | | |||||||||| | | | ||
Sbjct 3570 TGCCTCTGACCAGCAAACAACTGTCACCATTCAAGTATATGAAGGTGAACGTCCAATGAC 3629
Query 476053 TAAAGATAATAACAAACTTGGAACTTTTAATCTTGA-AGGTATTCCTCCTGCTCCCAGAG 476111
|||||||| || | || | ||| || |||| || ||||| || || || | |
Sbjct 3630 CAAAGATAACCACTTGTTGGGTAAATTTGAT-TTGACTGGCATTCCACCAGCACCACGTG 3688
Query 476112 GAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATT 476158
| |||| |||||||| || | ||||| || ||||| || ||||||
Sbjct 3689 GTATTCCACAAATTGAGGTATCCTTTGAGATCGATGCTAACGGTATT 3735
>seq1985
Length=11301
Score = 141 bits (156), Expect = 6e-28
Identities = 161/214 (75%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 474654 TTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG--AGCTC 474711
|||| || ||||||||||| | ||||| ||||||||| || | ||| || |
Sbjct 1472 TTTCCCCACAACAAATTTCTGCTGAAATTTTAATTAAAATGAAAAAAGCTGCGGAAGAT- 1530
Query 474712 ATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTC 474771
||| | || | |||| || || || || || ||||||||||| |||||||| ||| |
Sbjct 1531 -TATTTAGGCGAGAAAGTTACAGACGCTGTTATAACTGTTCCAGCTTATTTTAACGATGC 1589
Query 474772 TCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTAT 474831
|||| | |||||||| ||||| || || | |||||||||||||||||| | | |||||
Sbjct 1590 TCAAAGGCAAGCAACAAAAGACGCTGGTAAAATTGCAGGTCTTAATGTGCAAAGAATTAT 1649
Query 474832 TAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865
||||||||||| || || |||||||| | ||||
Sbjct 1650 AAATGAACCAACTGCTGCTGCACTTGCATTTGGT 1683
Score = 118 bits (130), Expect = 7e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 290827 ACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGC 290886
|||| ||| | || ||| || ||||||||||||||||||||| |||| |||||||||
Sbjct 1683 ACCAAATGCAAGTGCAGCAGCAGTTGGTTCATTTATAATTCTTTGCACATTAAGACCTGC 1624
Query 290887 AATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGT 290946
|||||| | | ||| ||||| || | ||| ||||| ||||||||||| || || ||
Sbjct 1623 AATTTTACCAGCGTCTTTTGTTGCTTGCCTTTGAGCATCGTTAAAATAAGCTGGAACAGT 1564
Query 290947 AATAACAGCtttttccactttctttttcaaataattttctgccatttgttttatttcTAT 291006
|||||||| | | ||||||| ||||||| ||| || || ||| |||| ||
Sbjct 1563 TATAACAGCGTCTGTAACTTTCTCGCCTAAATAATCTTCCGCAGCTTTTTTCATTTTAAT 1504
Query 291007 AAGTATTTGTGCGCAAATTTCTT 291029
| |||| || |||||| ||
Sbjct 1503 TAAAATTTCAGCAGAAATTTGTT 1481
Score = 109 bits (120), Expect = 4e-18
Identities = 251/376 (67%), Gaps = 14/376 (4%)
Strand=Plus/Plus
Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852
|||||||||||||| || ||| || || || | |||| | | ||| |||||
Sbjct 2312 AATCCTGATGAAGCAGTGTCATTAGGTGCAGCAATACAAGGTTCAGTATTAACAGGT--- 2368
Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912
||||| ||| | | || | ||| |||| ||||| || | || | ||| ||
Sbjct 2369 --------GAAACAAAAGA-TCTTCTTCTTCTTGATGTAACACCTTTATCTATTGGTATT 2419
Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972
|||||| | || || | |||||| |||||| | |||||| | || ||| |||
Sbjct 2420 GAAACAATGGGTGGTGTAATGACTGTTCTTATACCTAAAAATACGACAATTCCAA-CAAG 2478
Query 475973 AAATCAA-AAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTT 476031
|||||| |||| || || || | ||||||||||| | ||| || || | ||
Sbjct 2479 AAATCAGCAAGTGTTCTCTACGGCTGATGATAATCAAAATTCAGTAGGAATTAAAGTATT 2538
Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091
|||| ||||||||| || |||||||| | || |||||| | |||||
Sbjct 2539 CCAAGGCGAAAGAAAACGTTCTTCTGATAATAAATTGTTAGGTGAATTTAATTTAGAAGG 2598
Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151
||| |||||||| |||| ||||||||||||||||| ||||||||||| ||
Sbjct 2599 TATAGACCCTGCTCCACGAGGGACACCTCAAATTGAAGTTACATTTGATATTGACCAGAA 2658
Query 476152 TGGTATTCTTAATGTT 476167
||||||| | | ||||
Sbjct 2659 TGGTATTATCAGTGTT 2674
>seq13975
Length=1469
Score = 120 bits (132), Expect = 2e-21
Identities = 123/161 (76%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
||||||||| |||||||| ||||| || ||| ||||| | ||| | ||| |||| ||
Sbjct 1282 TGCAATTGGAATTGATTTGGGAACCACATACTCCTGTGTTGGTGTCTTTCAACATGGAAA 1341
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
|||||||||||||||||| |||||||| ||| | |||||||| ||||| | || ||
Sbjct 1342 AGTAGAAATAATTGCCAACGACCAAGGAAATCGTACAACACCCAGTTATGTGGCATTCAC 1401
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488
|| | || | | | ||||| ||||| || ||| ||||||
Sbjct 1402 AGATTCAGAGCGTTTGATTGGTGATGCCGCCAAAAATCAAG 1442
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3266847357740252
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |