Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_020416.1
Length=160221
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 237 2e-57
>seq2789
Length=15484
Score = 237 bits (262), Expect = 2e-57
Identities = 698/1060 (66%), Gaps = 43/1060 (4%)
Strand=Plus/Plus
Query 37721 ATTCCGATATATCCAAGCGAAATAGAACTTCTACCATTTTTAAACAACTCAATGATTTCA 37780
||||| ||||| || | ||||| || ||| ||||||||||| | ||||| || |||
Sbjct 2742 ATTCCTATATAGCCTAATGAAATTGATGCTCTTCCATTTTTAAAAATTTCAATAATATCA 2801
Query 37781 TCATCTGGTTTCATTCGAACGCCAAAAGCTCCTTCTTGATACAGAATCGGAGCTACAGAA 37840
|| ||||| || | || | || |||| ||||| ||||| || || || || |
Sbjct 2802 TCTTCTGGATTAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGGCAACCTTA 2861
Query 37841 GCTTTTACACCTTTTAACGATTCAATACGAAGCAGCAACGCGTCTTTACAAATCTTCATT 37900
|||||||||||||| | | |||||| | || || | | |||| ||| || | |
Sbjct 2862 GCTTTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAATATTTAAT 2921
Query 37901 CGGCAGTCTAGTAGACGCATGAACATGTTTAAATCTGTTTTGCCGTTGACCTGAGAATCC 37960
| |||| || | || || | || ||| || || |||| ||
Sbjct 2922 CTTTTTTCTAATATAAA-ATTAAATTTTTCAAAA-----TTACCACAT-CCTGCT--TCA 2972
Query 37961 AAAGCTATACGAGGAAGATTTAATGTAACAACACCTAAATTATTGCGTCCGTCAAGAATA 38020
| ||||| | |||| |||||| |||| |||||||||||||| | ||| || |||||
Sbjct 2973 ATTGCTATTCTGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAATA 3032
Query 38021 AATTTACCATCGGAATTTTTCCATGCGCTCAAA--AAGCTTCTACACCCCATTGGAGA-- 38076
||||||| || || ||| | ||| |||||||| ||||||||||| |
Sbjct 3033 CTATTACCATTTTCATCTT--CATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGTCT 3090
Query 38077 TACAGGAATAGGAGAACCAGTAATCTTACGATTATTTTTGGCGC-TAAT----AATATCG 38131
|| ||||| ||||| || || | | || || | |||| ||||||
Sbjct 3091 TAAAGGAA--------CCAGTTGTCCTAACA--ACTT---GCTCATAATTTAAAATATCA 3137
Query 38132 GGATACATTCGCTTAGAAGCGCATTCTAAAGCTAGTTGTTTGATATCATAATTTGGGTCT 38191
||||||||||| | | | ||||| | || |||||||| ||||||||||| || ||
Sbjct 3138 GGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTAGGATCG 3197
Query 38192 TCACTATGAAG---ATTTAAACCTTCTTCAACGAACATAACCAATTTAGGAAAAATTGGA 38248
|||| || |||| ||||||| | | | ||| | ||| ||||| | ||
Sbjct 3198 ---CTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACTGCC 3254
Query 38249 GTAATTCCATGACGACCTAATCCTCGAATACGATTTTTAAGAATAGCTTGTTGAATTAGT 38308
|| || || ||||| || || | ||| | | || | || |||||||| |
Sbjct 3255 GTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATTAAT 3314
Query 38309 TTTTCTTCCCAAGATGTCCCCATACCAAATGTAATGGTAACGAAAGGTGTTTGGCCGTTA 38368
|||| || | | || | ||||| || ||||| || || ||||| || ||
Sbjct 3315 CTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTGTCCATTT 3374
Query 38369 GAACTGAAAAGAGTATTAACTTCATATTCATATCCTTGAAAAGCATCGAATACAT-CTTT 38427
| | | |||||||| ||||||||| |||||||||||||||| || |||| ||||
Sbjct 3375 GCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-ACATTCTTT 3433
Query 38428 TTCTGTTTTTTCTTGAGCGTATAATTCAGCTTCTGGAATATGATATCGGCGAGCGTCTTC 38487
||| ||||||| | | | ||| || | | || |||| |||| | ||||
Sbjct 3434 TTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTCTTT 3493
Query 38488 GAT-ATGTTTGTTGAAAGTTGCTTCTACATAAGGAGCTAGTACTTGGTCGACATTAGCAA 38546
|| | ||| || | | |||| ||||||||| |||| | |||| ||| ||
Sbjct 3494 AATTAACTTTATTTCA-GAAGCTTTTACATAAGGGGCTAAAATAATATCGATATTGTTAA 3552
Query 38547 ATGTAGTTCCACCATATTGATGAGAAGCTACTTGAGCTGTAATTTGAGCCATTACGGCAG 38606
|| ||||||||||| |||| || ||||| ||| | |||||||| ||| || |
Sbjct 3553 TCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCG 3612
Query 38607 TTGCTACACCAATTGAATTTGATGTTTCAATTTCAGCATTACCGAGTTTAAACCCATTTT 38666
||||| ||||||||| || ||||||||||||||||| || | |||||| ||| ||
Sbjct 3613 TTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTT 3672
Query 38667 GAAGCATTCCGGCTAAATCTACTAAGCAACAGTTAGTAAACGGAAGCGATGGTGAATAAT 38726
||||||||| |||||| ||||| ||| ||| | |||| ||||||||||||
Sbjct 3673 CAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAATAAT 3732
Query 38727 CCATGTCATGAAAATGGATAATTCCTTTATCATGAGCATC 38766
| | |||||| |||| || ||||| |||||||| ||
Sbjct 3733 CTAAATCATGATAATGAATTTCACCTTTTTCATGAGCGTC 3772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 512380261605240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |