Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_020416.1 Length=160221 Score E Sequences producing significant alignments: (Bits) Value seq2789 237 2e-57 >seq2789 Length=15484 Score = 237 bits (262), Expect = 2e-57 Identities = 698/1060 (66%), Gaps = 43/1060 (4%) Strand=Plus/Plus Query 37721 ATTCCGATATATCCAAGCGAAATAGAACTTCTACCATTTTTAAACAACTCAATGATTTCA 37780 ||||| ||||| || | ||||| || ||| ||||||||||| | ||||| || ||| Sbjct 2742 ATTCCTATATAGCCTAATGAAATTGATGCTCTTCCATTTTTAAAAATTTCAATAATATCA 2801 Query 37781 TCATCTGGTTTCATTCGAACGCCAAAAGCTCCTTCTTGATACAGAATCGGAGCTACAGAA 37840 || ||||| || | || | || |||| ||||| ||||| || || || || | Sbjct 2802 TCTTCTGGATTAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGGCAACCTTA 2861 Query 37841 GCTTTTACACCTTTTAACGATTCAATACGAAGCAGCAACGCGTCTTTACAAATCTTCATT 37900 |||||||||||||| | | |||||| | || || | | |||| ||| || | | Sbjct 2862 GCTTTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAATATTTAAT 2921 Query 37901 CGGCAGTCTAGTAGACGCATGAACATGTTTAAATCTGTTTTGCCGTTGACCTGAGAATCC 37960 | |||| || | || || | || ||| || || |||| || Sbjct 2922 CTTTTTTCTAATATAAA-ATTAAATTTTTCAAAA-----TTACCACAT-CCTGCT--TCA 2972 Query 37961 AAAGCTATACGAGGAAGATTTAATGTAACAACACCTAAATTATTGCGTCCGTCAAGAATA 38020 | ||||| | |||| |||||| |||| |||||||||||||| | ||| || ||||| Sbjct 2973 ATTGCTATTCTGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAATA 3032 Query 38021 AATTTACCATCGGAATTTTTCCATGCGCTCAAA--AAGCTTCTACACCCCATTGGAGA-- 38076 ||||||| || || ||| | ||| |||||||| ||||||||||| | Sbjct 3033 CTATTACCATTTTCATCTT--CATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGTCT 3090 Query 38077 TACAGGAATAGGAGAACCAGTAATCTTACGATTATTTTTGGCGC-TAAT----AATATCG 38131 || ||||| ||||| || || | | || || | |||| |||||| Sbjct 3091 TAAAGGAA--------CCAGTTGTCCTAACA--ACTT---GCTCATAATTTAAAATATCA 3137 Query 38132 GGATACATTCGCTTAGAAGCGCATTCTAAAGCTAGTTGTTTGATATCATAATTTGGGTCT 38191 ||||||||||| | | | ||||| | || |||||||| ||||||||||| || || Sbjct 3138 GGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTAGGATCG 3197 Query 38192 TCACTATGAAG---ATTTAAACCTTCTTCAACGAACATAACCAATTTAGGAAAAATTGGA 38248 |||| || |||| ||||||| | | | ||| | ||| ||||| | || Sbjct 3198 ---CTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACTGCC 3254 Query 38249 GTAATTCCATGACGACCTAATCCTCGAATACGATTTTTAAGAATAGCTTGTTGAATTAGT 38308 || || || ||||| || || | ||| | | || | || |||||||| | Sbjct 3255 GTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATTAAT 3314 Query 38309 TTTTCTTCCCAAGATGTCCCCATACCAAATGTAATGGTAACGAAAGGTGTTTGGCCGTTA 38368 |||| || | | || | ||||| || ||||| || || ||||| || || Sbjct 3315 CTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTGTCCATTT 3374 Query 38369 GAACTGAAAAGAGTATTAACTTCATATTCATATCCTTGAAAAGCATCGAATACAT-CTTT 38427 | | | |||||||| ||||||||| |||||||||||||||| || |||| |||| Sbjct 3375 GCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-ACATTCTTT 3433 Query 38428 TTCTGTTTTTTCTTGAGCGTATAATTCAGCTTCTGGAATATGATATCGGCGAGCGTCTTC 38487 ||| ||||||| | | | ||| || | | || |||| |||| | |||| Sbjct 3434 TTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTCTTT 3493 Query 38488 GAT-ATGTTTGTTGAAAGTTGCTTCTACATAAGGAGCTAGTACTTGGTCGACATTAGCAA 38546 || | ||| || | | |||| ||||||||| |||| | |||| ||| || Sbjct 3494 AATTAACTTTATTTCA-GAAGCTTTTACATAAGGGGCTAAAATAATATCGATATTGTTAA 3552 Query 38547 ATGTAGTTCCACCATATTGATGAGAAGCTACTTGAGCTGTAATTTGAGCCATTACGGCAG 38606 || ||||||||||| |||| || ||||| ||| | |||||||| ||| || | Sbjct 3553 TCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCG 3612 Query 38607 TTGCTACACCAATTGAATTTGATGTTTCAATTTCAGCATTACCGAGTTTAAACCCATTTT 38666 ||||| ||||||||| || ||||||||||||||||| || | |||||| ||| || Sbjct 3613 TTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTT 3672 Query 38667 GAAGCATTCCGGCTAAATCTACTAAGCAACAGTTAGTAAACGGAAGCGATGGTGAATAAT 38726 ||||||||| |||||| ||||| ||| ||| | |||| |||||||||||| Sbjct 3673 CAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAATAAT 3732 Query 38727 CCATGTCATGAAAATGGATAATTCCTTTATCATGAGCATC 38766 | | |||||| |||| || ||||| |||||||| || Sbjct 3733 CTAAATCATGATAATGAATTTCACCTTTTTCATGAGCGTC 3772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512380261605240