Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq982 107 1e-18 seq2021 98.7 5e-16 >seq982 Length=16097 Score = 107 bits (118), Expect = 1e-18 Identities = 135/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 35887 CCTTTTCCATAAATGATATCTTCTGTTACTACTTTAAATGGTGGACCAACTTTATTTTTG 35946 |||| |||||||| ||||| | ||| |||||||||||| || ||||||||||| Sbjct 4898 CCTTCACCATAAATTATATCAAATTCAACTTCTTTAAATGGTGCGCCCACTTTATTTTTT 4957 Query 35947 ACAATTTTGATTTGTTGCTTGA-ATCCAATAACATCTTCACCTTCTTTAATAACTCCTTT 36005 ||| ||| | || ||| || | ||| ||||| | ||||| |||||||| || | ||| Sbjct 4958 GCAACTTTTACTT-TTGTTTCACTTCCTATAACGTTATCACCATCTTTAATCACGCTTTT 5016 Query 36006 ATTTTTGATTTCAAGTCTTTGTGTTGCATAGAATTTCAACGCTTTTCCTCCTGTAGTTGT 36065 || | || |||||||| | ||||||||||| || || || || || |||||||| Sbjct 5017 TCTTCTTATATCAAGTCTAACAGAAGCATAGAATTTTAAAGCATTACCACCAGTAGTTGT 5076 Query 36066 TTC 36068 ||| Sbjct 5077 TTC 5079 >seq2021 Length=2943 Score = 98.7 bits (108), Expect = 5e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992 ||| ||||| || || ||||| | |||||||||||||||| || | ||||| || Sbjct 885 CATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGATACTCTTCCTT 826 Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052 || ||| || || | ||| || || ||||| ||||| |||||||| ||||||||||| Sbjct 825 GCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCTAAATA 766 Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112 ||| || || ||| | ||| || || || ||||| ||||| | || | ||| Sbjct 765 GATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATT 706 Query 26113 GAAAACTTTCAACATTGGAACTAATCC 26139 ||| || || ||| || ||||| || Sbjct 705 GAACACACGCAGCATAGGCACTAAACC 679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252944247212675