Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq982 107 1e-18
seq2021 98.7 5e-16
>seq982
Length=16097
Score = 107 bits (118), Expect = 1e-18
Identities = 135/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 35887 CCTTTTCCATAAATGATATCTTCTGTTACTACTTTAAATGGTGGACCAACTTTATTTTTG 35946
|||| |||||||| ||||| | ||| |||||||||||| || |||||||||||
Sbjct 4898 CCTTCACCATAAATTATATCAAATTCAACTTCTTTAAATGGTGCGCCCACTTTATTTTTT 4957
Query 35947 ACAATTTTGATTTGTTGCTTGA-ATCCAATAACATCTTCACCTTCTTTAATAACTCCTTT 36005
||| ||| | || ||| || | ||| ||||| | ||||| |||||||| || | |||
Sbjct 4958 GCAACTTTTACTT-TTGTTTCACTTCCTATAACGTTATCACCATCTTTAATCACGCTTTT 5016
Query 36006 ATTTTTGATTTCAAGTCTTTGTGTTGCATAGAATTTCAACGCTTTTCCTCCTGTAGTTGT 36065
|| | || |||||||| | ||||||||||| || || || || || ||||||||
Sbjct 5017 TCTTCTTATATCAAGTCTAACAGAAGCATAGAATTTTAAAGCATTACCACCAGTAGTTGT 5076
Query 36066 TTC 36068
|||
Sbjct 5077 TTC 5079
>seq2021
Length=2943
Score = 98.7 bits (108), Expect = 5e-16
Identities = 146/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 25933 CATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTT 25992
||| ||||| || || ||||| | |||||||||||||||| || | ||||| ||
Sbjct 885 CATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGATACTCTTCCTT 826
Query 25993 TCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATA 26052
|| ||| || || | ||| || || ||||| ||||| |||||||| |||||||||||
Sbjct 825 GCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCTAAATA 766
Query 26053 GATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATT 26112
||| || || ||| | ||| || || || ||||| ||||| | || | |||
Sbjct 765 GATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATT 706
Query 26113 GAAAACTTTCAACATTGGAACTAATCC 26139
||| || || ||| || ||||| ||
Sbjct 705 GAACACACGCAGCATAGGCACTAAACC 679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 252944247212675
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |