Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq4853 181 1e-40 seq2021 158 1e-33 seq1845 150 2e-31 seq24243 138 1e-27 >seq4853 Length=2014 Score = 181 bits (200), Expect = 1e-40 Identities = 636/972 (65%), Gaps = 27/972 (3%) Strand=Plus/Minus Query 75597 CCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGA 75655 || |||| |||| |||||||| ||||| | ||||| | ||||| | || || | || Sbjct 957 CCTTCGCCATCTATTTGGAACCCTGGCACTCGGATATATTTGAGTTTTTGGATTTGAAGA 898 Query 75656 CTCAACCAAGGTGACGAAGAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCC 75714 | | || | |||||| ||| || | ||||| | || | | |||||||| || Sbjct 897 AAAATACT-GGCAAGGAAGAGTATCG-TGCACGAGATTTATTCTATGCTCTGTGGATACC 840 Query 75715 AGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAA 75774 ||| | |||||||| || || |||| | ||| | ||||| || | || ||| |||| Sbjct 839 CGACTTGTTCATGAAACGTGTGGAGGCAGATGGCGATTGGTCACTCATGTGCCCACACAA 780 Query 75775 GGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGA 75834 | || || || || | |||||| || || || || || || ||||| Sbjct 779 GTGCCCCGGACTACATGAAGTTTGGGGTGAAGAATTCGAGCAACTTTATGAGAAATATGA 720 Query 75835 AGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCA 75893 || ||| | |||||| ||||| ||| | | || ||| || ||| | Sbjct 719 GCGTGAAGGTCGTGCCAATCGCACTGTTAAAGCT-CAAACCTTGTGGTTTGCCATTATAG 661 Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGA 75953 | | || ||| ||||| || ||||||||||| || |||||||||||||| |||| Sbjct 660 AGGCTCAAGTGGAAACTGGCACTCCATATATGCTCTATAAGGATGCTTGTAATCGCAAGA 601 Query 75954 GTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGT 76013 |||| ||| ||||| | || || |||||| || ||| | ||||| |||||| |||| | Sbjct 600 GTAATCAACAGAATCTAGGCACTATCAAGTGCAGCAATTTATGCACTGAAATTGTAGAAT 541 Query 76014 ACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATG 76073 | | | |||||| | |||||||| ||||| || ||||| || || | || || Sbjct 540 ATTCGGCACCGGATGAAATTGCTGTTTGTAATTTAGCCTCAATTGCACTCAATATGTTTG 481 Query 76074 TCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTA 76133 |||| ||| | |||| ||||| | ||||||| | ||| | | || ||||| | Sbjct 480 TCAACCCAGACA---AGACTTATGATTTTAAAAAACTCAAAGAAGTTGCTAAAATTGTAA 424 Query 76134 CCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG- 76192 | ||| | ||| | |||| |||| |||| || |||| | | | | | ||| Sbjct 423 CACGTAATTTGAACAAAATCATAGACATCAATTACTA-CCCGCT--GCCGGAGGCCAAGC 367 Query 76193 --TCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTA 76250 || |||||||| || | || || ||| | || || ||||| |||| |||| ||| | Sbjct 366 GTTCAAATATGCGTCATCGTCCCATAGGTATTGGAGTACAAGGATTCGCAGATGCATTGA 307 Query 76251 TTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTG 76310 | | || || ||| ||| || ||||| || | ||| | || |||| Sbjct 306 TACTCATGCGTTATCCATATGAAAGTGAGGAAGCATTTAAGCTAAATCAACAAATATTTG 247 Query 76311 AAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCT 76370 |||| || ||| | | || |||| || || ||||| |||||||| | ||| ||| Sbjct 246 AAACGATTTATTATGGTGCCTTGGAAGCCAGCTGTGAGTTGGCTGAGAAGCTGGGTCCCT 187 Query 76371 ATGAGACATTTGAGGGTTCTCCCGCGTC-CCAAGGG-GTGCTTCAGTTTGATATGTGGGA 76428 |||| || | || ||| ||| | ||| |||||| | | |||| |||||||||| | Sbjct 186 ATGAAACTTATGCGGG--CTCACCTGTCAGCAAGGGAATTTTACAGTATGATATGTGGCA 129 Query 76429 AGGTGAAACCAAGCTCAACTACG--ACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAG 76486 | | ||| | || | ||| | | |||| | || ||||| || | | Sbjct 128 A-AAAACACCTA-CTGATCTATGGAATTGGGCGGAGCTGAAGGAGAAAATTGCTAAACAT 71 Query 76487 GGTCTTCGTAACAGTCTTT--TGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCT 76544 || | |||| | ||||| | || ||||||||||| ||||||||||| ||||||||| Sbjct 70 GGCGTGCGTA--ATTCTTTGCTCATTGCACCAATGCCTACAGCCTCCACTGCACAAATCA 13 Query 76545 TGGGTAATAATG 76556 |||| ||||||| Sbjct 12 TGGGCAATAATG 1 >seq2021 Length=2943 Score = 158 bits (174), Expect = 1e-33 Identities = 658/1024 (64%), Gaps = 46/1024 (4%) Strand=Plus/Plus Query 75597 CCATCGCGGTCTACTTGGAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-ACGA 75655 || |||| |||| || ||||| ||||| | ||||| | ||||| | || || | || Sbjct 755 CCTTCGCCATCTATTTAGAACCCTGGCACTCGGATATATTTGAGTTTTTGGATTTGAAGA 814 Query 75656 CTCAACCAAGGTGACGAAGAGGCTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCC 75714 | | || | |||||| ||| || | ||||| | |||| | || ||||| || Sbjct 815 AAAATACT-GGCAAGGAAGAGTATCG-TGCACGAGATTTATTTTATGCTCTATGGATACC 872 Query 75715 AGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAA 75774 ||| | |||||||| || || |||| | ||| | ||||| || | || ||| |||| Sbjct 873 CGACTTATTCATGAAACGTGTGGAGGCAGATGGCGATTGGTCACTCATGTGCCCACACAA 932 Query 75775 GGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGA 75834 | || || || || | |||||| || || || || || || ||||| Sbjct 933 GTGCCCCGGACTACATGAAGTTTGGGGTGAAGAATTCGAGCAACTTTATGAGAAATATGA 992 Query 75835 AGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTT-TGGAAGGCTATTCTCA 75893 || ||| | |||||| ||||| ||| | | || ||| || ||| | Sbjct 993 GCGTGAAGGTCGTGCCAATCGCACTGTTAAAGCT-CAAACCTTGTGGTTTGCCATTATAG 1051 Query 75894 AATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGA 75953 | | ||| ||| ||||| || ||||||||||| || |||||||||||||| |||| Sbjct 1052 AGGCTCAGGTGGAAACTGGCACTCCATATATGCTCTATAAGGATGCTTGTAATCGCAAGA 1111 Query 75954 GTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGT 76013 |||| ||| ||||| | || || |||||| || ||| | ||||| |||||| |||| | Sbjct 1112 GTAATCAACAGAATCTAGGCACTATCAAGTGCAGCAATTTATGCACTGAAATTGTAGAAT 1171 Query 76014 ACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATG 76073 | | | |||||| | |||||||| ||||| || ||||| || || | || || Sbjct 1172 ATTCGGCACCGGATGAAATTGCTGTTTGTAATTTAGCCTCAATTGCACTCAATATGTTTG 1231 Query 76074 TCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTA 76133 |||| ||| | |||| ||||| | ||||||| | ||| | | || ||||| | Sbjct 1232 TCAACCCAGACA---AGACTTATGATTTTAAAAAACTCAAAGAAGTTGCTAAAATTGTAA 1288 Query 76134 CCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG- 76192 | ||| | ||| | |||| |||| |||| || |||| | | | | | ||| Sbjct 1289 CACGTAATTTGAACAAAATCATAGACATCAATTACTA-CCCGCT--GCCGGAGGCCAAGC 1345 Query 76193 --TCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTA 76250 || |||||||| || | || || ||| | || || ||||| |||| |||| ||| | Sbjct 1346 GTTCAAATATGCGTCATCGTCCCATAGGTATTGGCGTACAAGGATTCGCAGATGCATTAA 1405 Query 76251 TTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTG 76310 | | || || ||| ||| || ||||| || | ||| | || |||| Sbjct 1406 TACTCATGCGTTATCCATATGAAAGTGAGGAAGCATTTAAGCTAAATCAACAAATATTTG 1465 Query 76311 AAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCT 76370 |||| || ||| | | || |||| || || ||||| |||||||| | ||| ||| Sbjct 1466 AAACGATTTATTATGGTGCCTTGGAAGCCAGCTGTGAGTTGGCTGAGAAGCTGGGTCCCT 1525 Query 76371 ATGAGACATTTGAGGGTT---------------------CTCCCGCGTC-CCAAGGG-GT 76407 |||| || | || ||| | ||| | ||| |||||| | Sbjct 1526 ATGAAACTTATGCGGGCTCANTTATGAAACTTATGCGGGCTCGCCTGTCAGCAAGGGAAT 1585 Query 76408 GCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACG--ACTGGGATGTTCTC 76465 | |||| |||||||||| || | ||| | || | ||| | | |||| | || Sbjct 1586 TTTACAGTATGATATGTGGCAA-AAAACACCTA-CTGATCTATGGAATTGGGCGGAGCTG 1643 Query 76466 AAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTT--TGATGGCACCAATGCCAA 76523 ||||| || | | || | |||| | ||||| | || ||||||||||| | Sbjct 1644 AAGGAGAAAATTGCTAAACATGGCGTGCGTA--ATTCTTTGCTTATTGCACCAATGCCTA 1701 Query 76524 CAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACA 76583 | |||||||| ||||||||| |||| |||||||||| ||||| || || || | || | Sbjct 1702 CGGCCTCCACTGCACAAATCATGGGCAATAATGAATCTTTTGAGCCTTATACTTCTAATA 1761 Query 76584 TCTA 76587 |||| Sbjct 1762 TCTA 1765 >seq1845 Length=2059 Score = 150 bits (166), Expect = 2e-31 Identities = 302/445 (68%), Gaps = 2/445 (0%) Strand=Plus/Plus Query 14340 AGCGCTCTATTGCCCATATGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATG 14399 ||||||| || || ||||| ||| || | || ||| ||| | || ||| | | Sbjct 1408 AGCGCTCCATACCCTCTATGGTGGACGGCTTTAAACCTGGTCAGCGTAAGGTGCTATTCA 1467 Query 14400 CTTGCTTCCATAAGAATCTCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCG 14459 |||||||| | ||| |||| ||||| |||||||||||||| || | | | || | Sbjct 1468 CTTGCTTCAAACGTAATGACAAGCATGAAGTGAAGGTGGCACAATTGTCTGGTTCGGTGG 1527 Query 14460 CGGACAAGTCTGCGTACCACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGG 14519 | || |||||||| || || || |||||||| |||||| || |||||||| |||| Sbjct 1528 CTGAAAAGTCTGCCTATCATCACGGTGAAGTGTCCTTACAAATGACTATTGTTAATTTGG 1587 Query 14520 CAAACGACTACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTA 14579 || | ||| || || || || ||||| || | || || ||||||||||||| | Sbjct 1588 CACAGAACTTTGTAGGCTCCAATAATATTAATCTGTTGGAGCCACGTGGTCAATTTGGCA 1647 Query 14580 CGCGTCTCATGGGTGGTAAGGATGCTTCTCAG-ACGAGGTACATTTTCACAAAACTTACC 14638 | ||| | | |||||||| ||||| | ||| || | || |||||||||||| | | Sbjct 1648 CACGTTTAACTGGTGGTAAAGATGCAGC-CAGTGCGCGTTATATTTTCACAAAATTGTCG 1706 Query 14639 AAGGAGGCTCGCAAGATCTTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGAT 14698 ||| |||| ||||| | | || | |||||| || | || | ||| | ||| Sbjct 1707 CCATTGGCACGCATGATCTATCACCCACAGGATGATCCCTTGCTGGAATACGAAGTTGAT 1766 Query 14699 GATGGACGCTCCATTGAACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAAT 14758 |||| || |||||||| | | || || |||| | |||| ||||| || || ||| Sbjct 1767 GATGCACAGAAAGTTGAACCAAAATGGTATATACCAATTATACCCATGGTACTGGTCAAT 1826 Query 14759 GGAACCGAGGGTATCGGTACGGGTT 14783 || | || || || || || |||| Sbjct 1827 GGTGCAGACGGCATAGGCACTGGTT 1851 >seq24243 Length=2007 Score = 138 bits (152), Expect = 1e-27 Identities = 299/445 (67%), Gaps = 2/445 (0%) Strand=Plus/Plus Query 14340 AGCGCTCTATTGCCCATATGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATG 14399 ||||||| || || |||| ||| || | || ||| ||| | || ||| | | Sbjct 1111 AGCGCTCCATACCCTCCATGGTGGACGGCTTTAAACCTGGCCAGCGTAAGGTGCTATTCA 1170 Query 14400 CTTGCTTCCATAAGAATCTCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCG 14459 |||||||| | ||| |||| ||||| |||| ||||||||| || | | | || | Sbjct 1171 CTTGCTTCAAACGTAATGACAAGCATGAAGTGAAAGTGGCACAATTGTCTGGTTCGGTGG 1230 Query 14460 CGGACAAGTCTGCGTACCACCATGGTGAAGTATCCTTAGCGGACACGATTGTTAAGTTGG 14519 | || ||||| || || || || |||||||| |||||| || |||||||| |||| Sbjct 1231 CTGAAAAGTCCGCCTATCATCACGGTGAAGTGTCCTTACAAATGACTATTGTTAATTTGG 1290 Query 14520 CAAACGACTACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTA 14579 || | ||| || || || || ||||| || | || || ||||||||||||| | Sbjct 1291 CACAGAACTTTGTAGGCTCCAATAATATTAATCTGTTGGAGCCACGTGGTCAATTTGGCA 1350 Query 14580 CGCGTCTCATGGGTGGTAAGGATGCTTCTCAG-ACGAGGTACATTTTCACAAAACTTACC 14638 | ||| | | |||||||| ||||| | ||| || | || |||||||||||| | | Sbjct 1351 CACGTTTAACTGGTGGTAAAGATGCAGC-CAGTGCGCGTTATATTTTCACAAAATTGTCG 1409 Query 14639 AAGGAGGCTCGCAAGATCTTTGATCCTCGGGATGACCCGATCCTCAACTACTTGGACGAT 14698 ||| |||| ||||| | | || | |||||| || | || | ||| | ||| Sbjct 1410 CCATTGGCACGCATGATCTATCACCCACAGGATGATCCCTTGCTGGAATACGAAGTTGAT 1469 Query 14699 GATGGACGCTCCATTGAACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAAT 14758 |||| || |||||||| | | || || |||| | |||| ||||| || || ||| Sbjct 1470 GATGCACAGAAAGTTGAACCAAAATGGTATATACCAATTATACCCATGGTACTGGTCAAT 1529 Query 14759 GGAACCGAGGGTATCGGTACGGGTT 14783 || | || || || || || |||| Sbjct 1530 GGTGCAGACGGCATAGGCACTGGTT 1554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596338063881120