Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_020863.1
Length=129155
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 170 2e-37
>seq2789
Length=15484
Score = 170 bits (188), Expect = 2e-37
Identities = 212/285 (74%), Gaps = 4/285 (1%)
Strand=Plus/Plus
Query 102143 GTTTTCCTTTATTAAAAGGTCGTTTGTTAGGATTACCTAAATATCCAGATACCCTTCTGA 102202
|||||||||||||||| || | | | ||| |||||||||||||| |||| ||||| |
Sbjct 2131 GTTTTCCTTTATTAAACGGCCTTGAATCAGGGCTACCTAAATATCCACATACTCTTCTTA 2190
Query 102203 TCACATACATCTTATCTTGT-TCACTGTTACCGCAATCAGGACAAACAAATCCTTTGCTG 102261
||||| | | ||| ||||| ||| ||||| ||| ||||||| ||| || || ||
Sbjct 2191 TCACAGATA-CTTTTCTTGCATCATGATTACCACAACTAGGACAAGAAAAACCCTTACTT 2249
Query 102262 GTAGATGTCATATTT-CCTTCAAAACCACATTCAAAACATTGGTCTACAGGGGTATTGAT 102320
|| | ||| ||| |||| | | ||||||||| |||| | ||| | || ||||| |
Sbjct 2250 GTGCAA-TCAAATTCGCCTTTATATCCACATTCATAACACTCGTCAATTGGAGTATTTGT 2308
Query 102321 TGCATAATAAGGTGTGATATTATAACTAAAATCCCAAAGATCCTCTAAAGCTTCAAGGTT 102380
| |||||||||| | ||||||||||||||||||| ||| ||||| |||| || ||
Sbjct 2309 TCCATAATAAGGCACAAATTTATAACTAAAATCCCAAACATCTTCTAATGCTTTAATATT 2368
Query 102381 TCTTCGCATATCGGGAAGTTCACTATAAGAGATAAAACCACCATT 102425
| ||| ||||| ||| ||||| ||| | ||||| ||||||||
Sbjct 2369 TTTTCTCATATTAGGATATTCACCGTAACAAATAAAGCCACCATT 2413
Score = 84.2 bits (92), Expect = 2e-11
Identities = 212/317 (67%), Gaps = 4/317 (1%)
Strand=Plus/Plus
Query 104311 TCATAGTTAAGGATATCAGGGTAAAGTCGTTTACTTGAGCATTCTAGAGCTAGTTGTTTG 104370
||||| || | |||||||| || | ||||| |||| ||||| || || ||||||||
Sbjct 3120 TCATAATTTAAAATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTT 3179
Query 104371 ATATCATAATTTGGATC-TTCTGGTTTGTGATTAATACCGTCTCTCACGCTATAAATTAG 104429
||||||||||| ||||| | | || | ||| | || ||| | | | | ||| ||
Sbjct 3180 ATATCATAATTAGGATCGCTATTAATTCT-ATTTGTCCCTTCTTTTATGGCAAAAACAAG 3238
Query 104430 TTTAGGAAAAACAGGTGTAACTTTATTCTTACCTAATCCGTCAATTTGAACTTGTAAAAT 104489
||| ||||| || | || |||||| || ||||| || | ||| | ||| ||
Sbjct 3239 TTTTGGAAATACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATAT 3298
Query 104490 CATTTCTTGGATTAATTTTGCTTCCCATGATGTTCCTAAACCAAAGCCCACAGAAATAAA 104549
|| ||| |||||| || | || || |||| | ||||| || | || || |||
Sbjct 3299 TGATTTTTGAATTAATCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAA 3358
Query 104550 GGGTGATTGTCCACTTGTGCAAGTCATACTATTCACCTGATATAGAAAAGTTTGACATGC 104609
|| | ||||||| ||| | | || | |||| | | |||| || |||| | ||
Sbjct 3359 TGGGGTTTGTCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGC 3418
Query 104610 ATCATAAACA-TCTTTT 104625
|||| ||||| ||||||
Sbjct 3419 ATCA-AAACATTCTTTT 3434
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 413014852015324
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |