Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_020863.1 Length=129155 Score E Sequences producing significant alignments: (Bits) Value seq2789 170 2e-37 >seq2789 Length=15484 Score = 170 bits (188), Expect = 2e-37 Identities = 212/285 (74%), Gaps = 4/285 (1%) Strand=Plus/Plus Query 102143 GTTTTCCTTTATTAAAAGGTCGTTTGTTAGGATTACCTAAATATCCAGATACCCTTCTGA 102202 |||||||||||||||| || | | | ||| |||||||||||||| |||| ||||| | Sbjct 2131 GTTTTCCTTTATTAAACGGCCTTGAATCAGGGCTACCTAAATATCCACATACTCTTCTTA 2190 Query 102203 TCACATACATCTTATCTTGT-TCACTGTTACCGCAATCAGGACAAACAAATCCTTTGCTG 102261 ||||| | | ||| ||||| ||| ||||| ||| ||||||| ||| || || || Sbjct 2191 TCACAGATA-CTTTTCTTGCATCATGATTACCACAACTAGGACAAGAAAAACCCTTACTT 2249 Query 102262 GTAGATGTCATATTT-CCTTCAAAACCACATTCAAAACATTGGTCTACAGGGGTATTGAT 102320 || | ||| ||| |||| | | ||||||||| |||| | ||| | || ||||| | Sbjct 2250 GTGCAA-TCAAATTCGCCTTTATATCCACATTCATAACACTCGTCAATTGGAGTATTTGT 2308 Query 102321 TGCATAATAAGGTGTGATATTATAACTAAAATCCCAAAGATCCTCTAAAGCTTCAAGGTT 102380 | |||||||||| | ||||||||||||||||||| ||| ||||| |||| || || Sbjct 2309 TCCATAATAAGGCACAAATTTATAACTAAAATCCCAAACATCTTCTAATGCTTTAATATT 2368 Query 102381 TCTTCGCATATCGGGAAGTTCACTATAAGAGATAAAACCACCATT 102425 | ||| ||||| ||| ||||| ||| | ||||| |||||||| Sbjct 2369 TTTTCTCATATTAGGATATTCACCGTAACAAATAAAGCCACCATT 2413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 212/317 (67%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 104311 TCATAGTTAAGGATATCAGGGTAAAGTCGTTTACTTGAGCATTCTAGAGCTAGTTGTTTG 104370 ||||| || | |||||||| || | ||||| |||| ||||| || || |||||||| Sbjct 3120 TCATAATTTAAAATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTT 3179 Query 104371 ATATCATAATTTGGATC-TTCTGGTTTGTGATTAATACCGTCTCTCACGCTATAAATTAG 104429 ||||||||||| ||||| | | || | ||| | || ||| | | | | ||| || Sbjct 3180 ATATCATAATTAGGATCGCTATTAATTCT-ATTTGTCCCTTCTTTTATGGCAAAAACAAG 3238 Query 104430 TTTAGGAAAAACAGGTGTAACTTTATTCTTACCTAATCCGTCAATTTGAACTTGTAAAAT 104489 ||| ||||| || | || |||||| || ||||| || | ||| | ||| || Sbjct 3239 TTTTGGAAATACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATAT 3298 Query 104490 CATTTCTTGGATTAATTTTGCTTCCCATGATGTTCCTAAACCAAAGCCCACAGAAATAAA 104549 || ||| |||||| || | || || |||| | ||||| || | || || ||| Sbjct 3299 TGATTTTTGAATTAATCTTTCCTCTTTTGTAATTCCAAGTCCAAAACCAAAAGTAACAAA 3358 Query 104550 GGGTGATTGTCCACTTGTGCAAGTCATACTATTCACCTGATATAGAAAAGTTTGACATGC 104609 || | ||||||| ||| | | || | |||| | | |||| || |||| | || Sbjct 3359 TGGGGTTTGTCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGC 3418 Query 104610 ATCATAAACA-TCTTTT 104625 |||| ||||| |||||| Sbjct 3419 ATCA-AAACATTCTTTT 3434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413014852015324