Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1470 277 2e-69 seq24243 131 2e-25 seq1845 131 2e-25 seq13975 100 4e-16 seq1985 91.5 2e-13 >seq1470 Length=5781 Score = 277 bits (306), Expect = 2e-69 Identities = 977/1501 (65%), Gaps = 69/1501 (5%) Strand=Plus/Plus Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392 |||||||||| | | || | ||||| || ||||| | || || ||||| ||||||| Sbjct 2336 GTGTTGGTGTTTATAAGAACGGACGTGTTGAAATTATTGCCAACGATCAAGGTAACCGTA 2395 Query 195393 CAACTCCATCGTACGTTGCCTTTACAGATAA---TGAACGTCTCGTTGGAGATGCCGCAA 195449 ||||| || || |||| || ||| | | ||||||| | |||| |||||||| | Sbjct 2396 TCACTCCCTCATATGTTGGTTTCACAAGTGAAGGTGAACGTTTGATTGGTGATGCCGCCA 2455 Query 195450 AAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTC 195509 |||||||| | | || || ||||| || || || || |||||| | ||||||| Sbjct 2456 AAAATCAGTTGACCACAAATCCAGAGAATACAGTATTCGATGCCAAGCGTTTGATTGGTC 2515 Query 195510 GCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC 195569 | | | ||| || || ||| | || || || || | | |||| | Sbjct 2516 GTGAATGGAATGATGCCAATGTGCAACATGACATCAAATTCTTCCCCTTCAAAGTGAT-- 2573 Query 195570 CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAA---TTTCACGGTGAGAAGAAACAAT 195626 || | ||||| ||| | ||| || | ||| ||| | ||| | Sbjct 2574 -CGAAAAGAACTCCAAGCCACACATTCAAGTTCAAACTTCTCAGGGT---ACCAAAGTGT 2629 Query 195627 TTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTT 195686 |||| || |||||||| || | ||||| ||| ||| |||||||| || || ||| | | Sbjct 2630 TTGCACCTGAAGAAATCTCCGCCATGGTTTTGGGTAAAATGAAGGACACCGCTGAAGCCT 2689 Query 195687 TCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCAC 195746 | |||| || | || | |||| || || || ||||| || ||||| | ||| | | Sbjct 2690 ACTTGGGCAAGAAGGTCACCAATGCTGTGGTCACAGTACCCGCCTACTTTAACGATGCTC 2749 Query 195747 AACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCA 195806 |||| || || || || ||||||| | |||||| ||||| || | | | || || | Sbjct 2750 AACGTCAAGCCACCAAAGACGCTGGCGTTATTGCTGGTCTTAATGTTATGCGTATCATTA 2809 Query 195807 ATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAA 195866 |||| || || || ||||| || || || ||| |||||||||| ||| ||| || | Sbjct 2810 ATGAGCCCACCGCTGCTGCCATAGCCTACGGTTTGGACAAGAAGGAGGGTGAA---AAGA 2866 Query 195867 ATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAG 195926 |||| ||| | || ||| | ||||||||||| |||||||| ||||| | | ||||| Sbjct 2867 ATGTGTTGGTATTCGATTTGGGTGGTGGTACTTTTGATGTGTCACTCTTGACCATTGACA 2926 Query 195927 GTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCG 195986 ||| ||||||| || ||| || |||||||||||| | |||||||||||||||| Sbjct 2927 ACGGTGTATTCGAGGTGGTGGCCACCAACGGTGATACTCATTTGGGTGGTGAAGATTTCG 2986 Query 195987 ATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAG---AAAGATA 196043 || |||| | | |||||| | | || | ||||| ||| || |||| Sbjct 2987 ATCAACGTGTCATGGATCATTTCATTAAATTGTAC---AAGAAGAAGAAGGGCAAGGATA 3043 Query 196044 TT--TCTGGAAATCCTAGGGCTCTTCGTCGGCTTAG-GACTGCAT-GTGAACGTGCCAAA 196099 || ||| | || | ||| | | || | ||| | ||||| || ||| Sbjct 3044 TTCGCAAGGACAACC--GTGCTGTAC--------AGAAATTGCGTCGTGAAGTTGAGAAA 3093 Query 196100 -CGAA--CTCTCTCTTCTACGGCTCAAACAATG---GTTGAGATTGATTCGTTGTTTGAC 196153 | || | || ||| ||||| | || |||| || || || || ||||| Sbjct 3094 GCCAAGCGTGCCTTGTCTGGTGCTCATCAAGTGCGCATTGAAATCGAATCATTCTTTGAA 3153 Query 196154 GGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTG 196213 || |||||| | ||| | || ||||| |||||||| || ||| || ||| Sbjct 3154 GGTGATGACTTTGCTGAAACCTTGACACGTGCCAAATTTGAAGAATTGAACATGGACTTG 3213 Query 196214 TTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCG-TGACGCAAAGATGGATAAGTC 196272 || | | || ||||||| || |||| ||| | || || | ||| || Sbjct 3214 TTCCGTTCCACTTTGAAACCTGTGCAAAAAGT-CTTGGAAGATGCTGACATGAGCAA--- 3269 Query 196273 TAAGGTTG---ATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACA 196329 |||| || | |||||||| || || || || ||||| |||||||| || | ||||| Sbjct 3270 AAAGGATGTACACGAAATTGTGCTGGTTGGTGGTTCAACACGTATTCCCAAAGTACAACA 3329 Query 196330 GATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG----ATCAACCCGGATG 196385 || || ||||| | ||| || || || |||||||| |||| Sbjct 3330 ATTGGTTAAGGAATTCTT-TGGAGGCAAG---GAACCATCTCGTGGTATCAACCCTGATG 3385 Query 196386 AAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATA 196445 |||| || || |||||||| || || || |||| | | | || |||| | ||| | Sbjct 3386 AAGCTGTGGCCTATGGTGCCGCTGTACAAGCTGGTGTATTGTCTGGTGAACAGGATACTG 3445 Query 196446 ACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGG 196505 | | ||| |||| | | ||||| || | | ||||| ||||||| | || Sbjct 3446 ATG-CCATTGTCTTGT-----TGGATGTCAACCCATTGACTATGGGTATTGAAACTGTGG 3499 Query 196506 GTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAG 196565 ||||||| ||||| ||| | ||| | ||||| |||||| |||||||| |||| Sbjct 3500 GTGGTGTGATGACCAAATTGATTCCACGTAACACTGTTATTCCCACTAAGAAATCACAAA 3559 Query 196566 TCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAAC 196625 | || || || || || | ||| || ||| ||||||||||||||||| |||| Sbjct 3560 TTTTCTCTACTGCCTCTGACCAGCAAACAACTGTCACCATTCAAGTATATGAAGGTGAAC 3619 Query 196626 GCTCCCGTG-CAAAGGATAACCATCTACTTGG--AACTTTCGATTTGACGGGGATTCCAG 196682 | ||| || | || |||||||| || |||| || ||| |||||||| || |||||| Sbjct 3620 G-TCCAATGACCAAAGATAACCA-CTTGTTGGGTAAATTT-GATTTGACTGGCATTCCAC 3676 Query 196683 CTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTC 196742 | ||||| | ||| ||||||| ||| | || | ||| || || || || || || ||| Sbjct 3677 CAGCACCACGTGGTATTCCACAAATTGAGGTATCCTTTGAGATCGATGCTAACGGTATTT 3736 Query 196743 TAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATG 196802 | | || | ||||| ||||||| |||| || |||||||||||||||||||| | Sbjct 3737 TGCAAGTGAGCGCTGAAGACAAGGGCACTGGTAACAAGGAAAAGATTGTGATTACCAACG 3796 Query 196803 A 196803 | Sbjct 3797 A 3797 >seq24243 Length=2007 Score = 131 bits (144), Expect = 2e-25 Identities = 247/358 (69%), Gaps = 4/358 (1%) Strand=Plus/Minus Query 181869 CCAGTTCCAATACCCTCACTTCCATTGACCAAGATCATGGGTATAGTAGGCATATAGAAC 181928 ||||| || || || || |||||||||| | |||||||||| | || ||||| | Sbjct 1552 CCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACCAT 1493 Query 181929 TCTGGTTCAATAGAGCGACCATCATCATCCAAATAATTAAGAATAGCATCATCCTTGGGA 181988 | |||||||| | |||||||| | || | || | | |||||||| || Sbjct 1492 TTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTGGG 1433 Query 181989 TCAAAAATTTTACGAGCCTCGGATGTCAGTCGTGTGAAGATATATCTCGT-CTGGCTAGC 182047 | | | || | || ||| | | || | |||||| ||||| | || |||||| || Sbjct 1432 TGATAGATCATGCGTGCCAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGCT-GC 1374 Query 182048 ATCCTTACCACCCAAAAGCCGTGTTCCAAATTGACCACATGGTTCGAGAAGATTGATATT 182107 ||| |||||||| | ||||| ||||||||||||| ||| || | ||||| ||||| Sbjct 1373 ATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATATT 1314 Query 182108 GTTAGATCCTGTGTAATCATTCGCCAATTTCACAATTGT-ATCAGCGAGGGATACTTCAC 182166 || || ||| | | | ||||| || ||||| || || | ||| | ||||||| Sbjct 1313 ATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTTCAC 1255 Query 182167 CGTGATGATAGGCAGACTTTTCAGCCACAAAGGCGGCAAGTTGAGCAACTTTCATTTC 182224 ||||||||||||| |||||||||||||| | | | | ||| || ||||||| ||| Sbjct 1254 CGTGATGATAGGCGGACTTTTCAGCCACCGAACCAGACAATTGTGCCACTTTCACTTC 1197 >seq1845 Length=2059 Score = 131 bits (144), Expect = 2e-25 Identities = 229/328 (70%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 181869 CCAGTTCCAATACCCTCACTTCCATTGACCAAGATCATGGGTATAGTAGGCATATAGAAC 181928 ||||| || || || || |||||||||| | |||||||||| | || ||||| | Sbjct 1849 CCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACCAT 1790 Query 181929 TCTGGTTCAATAGAGCGACCATCATCATCCAAATAATTAAGAATAGCATCATCCTTGGGA 181988 | |||||||| | |||||||| | || | || | | |||||||| || Sbjct 1789 TTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTGGG 1730 Query 181989 TCAAAAATTTTACGAGCCTCGGATGTCAGTCGTGTGAAGATATATCTCGT-CTGGCTAGC 182047 | | | || | || ||| | | || | |||||| ||||| | || |||||| || Sbjct 1729 TGATAGATCATGCGTGCCAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGCT-GC 1671 Query 182048 ATCCTTACCACCCAAAAGCCGTGTTCCAAATTGACCACATGGTTCGAGAAGATTGATATT 182107 ||| |||||||| | ||||| ||||||||||||| ||| || | ||||| ||||| Sbjct 1670 ATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATATT 1611 Query 182108 GTTAGATCCTGTGTAATCATTCGCCAATTTCACAATTGT-ATCAGCGAGGGATACTTCAC 182166 || || ||| | | | ||||| || ||||| || || | ||| | ||||||| Sbjct 1610 ATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTTCAC 1552 Query 182167 CGTGATGATAGGCAGACTTTTCAGCCAC 182194 |||||||||||||||||||||||||||| Sbjct 1551 CGTGATGATAGGCAGACTTTTCAGCCAC 1524 >seq13975 Length=1469 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || ||||| || ||||| ||||| || ||||| ||||||||||| | ||| ||| Sbjct 1283 GCAATTGGAATTGATTTGGGAACCACATACTCCTGTGTTGGTGTCTTTCAACATGGAAAA 1342 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 ||||| || || | || ||||||||||| |||||||| || || || || || ||| Sbjct 1343 GTAGAAATAATTGCCAACGACCAAGGAAATCGTACAACACCCAGTTATGTGGCATTCACA 1402 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCA 195456 ||| || ||| | |||| |||||||| |||||||| Sbjct 1403 GATTCAGAGCGTTTGATTGGTGATGCCGCCAAAAATCA 1440 >seq1985 Length=11301 Score = 91.5 bits (100), Expect = 2e-13 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 195656 TTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTT 195715 || ||||| ||||| | |||||||| || | || | | || | ||| || ||| Sbjct 1501 TTAATTAAAATGAAAAAAGCTGCGGAAGATTATTTAGGCGAGAAAGTTACAGACGCTGTT 1560 Query 195716 GTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT 195775 | ||||| || ||||| || | ||| | ||| | || || ||||| ||||||| | Sbjct 1561 ATAACTGTTCCAGCTTATTTTAACGATGCTCAAAGGCAAGCAACAAAAGACGCTGGTAAA 1620 Query 195776 ATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834 ||||| ||||| || ||| | |||||||| ||||||||||| || |||||| |||| | Sbjct 1621 ATTGCAGGTCTTAA-TGTGCAAAGAATTATAAATGAACCAACTGCTGCTGCACTTGCATT 1679 Query 195835 TGGT 195838 |||| Sbjct 1680 TGGT 1683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657607075379280