Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq1470 277 2e-69
seq24243 131 2e-25
seq1845 131 2e-25
seq13975 100 4e-16
seq1985 91.5 2e-13
>seq1470
Length=5781
Score = 277 bits (306), Expect = 2e-69
Identities = 977/1501 (65%), Gaps = 69/1501 (5%)
Strand=Plus/Plus
Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392
|||||||||| | | || | ||||| || ||||| | || || ||||| |||||||
Sbjct 2336 GTGTTGGTGTTTATAAGAACGGACGTGTTGAAATTATTGCCAACGATCAAGGTAACCGTA 2395
Query 195393 CAACTCCATCGTACGTTGCCTTTACAGATAA---TGAACGTCTCGTTGGAGATGCCGCAA 195449
||||| || || |||| || ||| | | ||||||| | |||| |||||||| |
Sbjct 2396 TCACTCCCTCATATGTTGGTTTCACAAGTGAAGGTGAACGTTTGATTGGTGATGCCGCCA 2455
Query 195450 AAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTC 195509
|||||||| | | || || ||||| || || || || |||||| | |||||||
Sbjct 2456 AAAATCAGTTGACCACAAATCCAGAGAATACAGTATTCGATGCCAAGCGTTTGATTGGTC 2515
Query 195510 GCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC 195569
| | | ||| || || ||| | || || || || | | |||| |
Sbjct 2516 GTGAATGGAATGATGCCAATGTGCAACATGACATCAAATTCTTCCCCTTCAAAGTGAT-- 2573
Query 195570 CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAA---TTTCACGGTGAGAAGAAACAAT 195626
|| | ||||| ||| | ||| || | ||| ||| | ||| |
Sbjct 2574 -CGAAAAGAACTCCAAGCCACACATTCAAGTTCAAACTTCTCAGGGT---ACCAAAGTGT 2629
Query 195627 TTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTT 195686
|||| || |||||||| || | ||||| ||| ||| |||||||| || || ||| | |
Sbjct 2630 TTGCACCTGAAGAAATCTCCGCCATGGTTTTGGGTAAAATGAAGGACACCGCTGAAGCCT 2689
Query 195687 TCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCAC 195746
| |||| || | || | |||| || || || ||||| || ||||| | ||| | |
Sbjct 2690 ACTTGGGCAAGAAGGTCACCAATGCTGTGGTCACAGTACCCGCCTACTTTAACGATGCTC 2749
Query 195747 AACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCA 195806
|||| || || || || ||||||| | |||||| ||||| || | | | || || |
Sbjct 2750 AACGTCAAGCCACCAAAGACGCTGGCGTTATTGCTGGTCTTAATGTTATGCGTATCATTA 2809
Query 195807 ATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAA 195866
|||| || || || ||||| || || || ||| |||||||||| ||| ||| || |
Sbjct 2810 ATGAGCCCACCGCTGCTGCCATAGCCTACGGTTTGGACAAGAAGGAGGGTGAA---AAGA 2866
Query 195867 ATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAG 195926
|||| ||| | || ||| | ||||||||||| |||||||| ||||| | | |||||
Sbjct 2867 ATGTGTTGGTATTCGATTTGGGTGGTGGTACTTTTGATGTGTCACTCTTGACCATTGACA 2926
Query 195927 GTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCG 195986
||| ||||||| || ||| || |||||||||||| | ||||||||||||||||
Sbjct 2927 ACGGTGTATTCGAGGTGGTGGCCACCAACGGTGATACTCATTTGGGTGGTGAAGATTTCG 2986
Query 195987 ATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAG---AAAGATA 196043
|| |||| | | |||||| | | || | ||||| ||| || ||||
Sbjct 2987 ATCAACGTGTCATGGATCATTTCATTAAATTGTAC---AAGAAGAAGAAGGGCAAGGATA 3043
Query 196044 TT--TCTGGAAATCCTAGGGCTCTTCGTCGGCTTAG-GACTGCAT-GTGAACGTGCCAAA 196099
|| ||| | || | ||| | | || | ||| | ||||| || |||
Sbjct 3044 TTCGCAAGGACAACC--GTGCTGTAC--------AGAAATTGCGTCGTGAAGTTGAGAAA 3093
Query 196100 -CGAA--CTCTCTCTTCTACGGCTCAAACAATG---GTTGAGATTGATTCGTTGTTTGAC 196153
| || | || ||| ||||| | || |||| || || || || |||||
Sbjct 3094 GCCAAGCGTGCCTTGTCTGGTGCTCATCAAGTGCGCATTGAAATCGAATCATTCTTTGAA 3153
Query 196154 GGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTG 196213
|| |||||| | ||| | || ||||| |||||||| || ||| || |||
Sbjct 3154 GGTGATGACTTTGCTGAAACCTTGACACGTGCCAAATTTGAAGAATTGAACATGGACTTG 3213
Query 196214 TTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCG-TGACGCAAAGATGGATAAGTC 196272
|| | | || ||||||| || |||| ||| | || || | ||| ||
Sbjct 3214 TTCCGTTCCACTTTGAAACCTGTGCAAAAAGT-CTTGGAAGATGCTGACATGAGCAA--- 3269
Query 196273 TAAGGTTG---ATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACA 196329
|||| || | |||||||| || || || || ||||| |||||||| || | |||||
Sbjct 3270 AAAGGATGTACACGAAATTGTGCTGGTTGGTGGTTCAACACGTATTCCCAAAGTACAACA 3329
Query 196330 GATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG----ATCAACCCGGATG 196385
|| || ||||| | ||| || || || |||||||| ||||
Sbjct 3330 ATTGGTTAAGGAATTCTT-TGGAGGCAAG---GAACCATCTCGTGGTATCAACCCTGATG 3385
Query 196386 AAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATA 196445
|||| || || |||||||| || || || |||| | | | || |||| | ||| |
Sbjct 3386 AAGCTGTGGCCTATGGTGCCGCTGTACAAGCTGGTGTATTGTCTGGTGAACAGGATACTG 3445
Query 196446 ACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGG 196505
| | ||| |||| | | ||||| || | | ||||| ||||||| | ||
Sbjct 3446 ATG-CCATTGTCTTGT-----TGGATGTCAACCCATTGACTATGGGTATTGAAACTGTGG 3499
Query 196506 GTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAG 196565
||||||| ||||| ||| | ||| | ||||| |||||| |||||||| ||||
Sbjct 3500 GTGGTGTGATGACCAAATTGATTCCACGTAACACTGTTATTCCCACTAAGAAATCACAAA 3559
Query 196566 TCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAAC 196625
| || || || || || | ||| || ||| ||||||||||||||||| ||||
Sbjct 3560 TTTTCTCTACTGCCTCTGACCAGCAAACAACTGTCACCATTCAAGTATATGAAGGTGAAC 3619
Query 196626 GCTCCCGTG-CAAAGGATAACCATCTACTTGG--AACTTTCGATTTGACGGGGATTCCAG 196682
| ||| || | || |||||||| || |||| || ||| |||||||| || ||||||
Sbjct 3620 G-TCCAATGACCAAAGATAACCA-CTTGTTGGGTAAATTT-GATTTGACTGGCATTCCAC 3676
Query 196683 CTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTC 196742
| ||||| | ||| ||||||| ||| | || | ||| || || || || || || |||
Sbjct 3677 CAGCACCACGTGGTATTCCACAAATTGAGGTATCCTTTGAGATCGATGCTAACGGTATTT 3736
Query 196743 TAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTGATTACCAATG 196802
| | || | ||||| ||||||| |||| || |||||||||||||||||||| |
Sbjct 3737 TGCAAGTGAGCGCTGAAGACAAGGGCACTGGTAACAAGGAAAAGATTGTGATTACCAACG 3796
Query 196803 A 196803
|
Sbjct 3797 A 3797
>seq24243
Length=2007
Score = 131 bits (144), Expect = 2e-25
Identities = 247/358 (69%), Gaps = 4/358 (1%)
Strand=Plus/Minus
Query 181869 CCAGTTCCAATACCCTCACTTCCATTGACCAAGATCATGGGTATAGTAGGCATATAGAAC 181928
||||| || || || || |||||||||| | |||||||||| | || ||||| |
Sbjct 1552 CCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACCAT 1493
Query 181929 TCTGGTTCAATAGAGCGACCATCATCATCCAAATAATTAAGAATAGCATCATCCTTGGGA 181988
| |||||||| | |||||||| | || | || | | |||||||| ||
Sbjct 1492 TTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTGGG 1433
Query 181989 TCAAAAATTTTACGAGCCTCGGATGTCAGTCGTGTGAAGATATATCTCGT-CTGGCTAGC 182047
| | | || | || ||| | | || | |||||| ||||| | || |||||| ||
Sbjct 1432 TGATAGATCATGCGTGCCAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGCT-GC 1374
Query 182048 ATCCTTACCACCCAAAAGCCGTGTTCCAAATTGACCACATGGTTCGAGAAGATTGATATT 182107
||| |||||||| | ||||| ||||||||||||| ||| || | ||||| |||||
Sbjct 1373 ATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATATT 1314
Query 182108 GTTAGATCCTGTGTAATCATTCGCCAATTTCACAATTGT-ATCAGCGAGGGATACTTCAC 182166
|| || ||| | | | ||||| || ||||| || || | ||| | |||||||
Sbjct 1313 ATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTTCAC 1255
Query 182167 CGTGATGATAGGCAGACTTTTCAGCCACAAAGGCGGCAAGTTGAGCAACTTTCATTTC 182224
||||||||||||| |||||||||||||| | | | | ||| || ||||||| |||
Sbjct 1254 CGTGATGATAGGCGGACTTTTCAGCCACCGAACCAGACAATTGTGCCACTTTCACTTC 1197
>seq1845
Length=2059
Score = 131 bits (144), Expect = 2e-25
Identities = 229/328 (70%), Gaps = 4/328 (1%)
Strand=Plus/Minus
Query 181869 CCAGTTCCAATACCCTCACTTCCATTGACCAAGATCATGGGTATAGTAGGCATATAGAAC 181928
||||| || || || || |||||||||| | |||||||||| | || ||||| |
Sbjct 1849 CCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACCAT 1790
Query 181929 TCTGGTTCAATAGAGCGACCATCATCATCCAAATAATTAAGAATAGCATCATCCTTGGGA 181988
| |||||||| | |||||||| | || | || | | |||||||| ||
Sbjct 1789 TTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTGGG 1730
Query 181989 TCAAAAATTTTACGAGCCTCGGATGTCAGTCGTGTGAAGATATATCTCGT-CTGGCTAGC 182047
| | | || | || ||| | | || | |||||| ||||| | || |||||| ||
Sbjct 1729 TGATAGATCATGCGTGCCAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGCT-GC 1671
Query 182048 ATCCTTACCACCCAAAAGCCGTGTTCCAAATTGACCACATGGTTCGAGAAGATTGATATT 182107
||| |||||||| | ||||| ||||||||||||| ||| || | ||||| |||||
Sbjct 1670 ATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAATATT 1611
Query 182108 GTTAGATCCTGTGTAATCATTCGCCAATTTCACAATTGT-ATCAGCGAGGGATACTTCAC 182166
|| || ||| | | | ||||| || ||||| || || | ||| | |||||||
Sbjct 1610 ATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTTCAC 1552
Query 182167 CGTGATGATAGGCAGACTTTTCAGCCAC 182194
||||||||||||||||||||||||||||
Sbjct 1551 CGTGATGATAGGCAGACTTTTCAGCCAC 1524
>seq13975
Length=1469
Score = 100 bits (110), Expect = 4e-16
Identities = 117/158 (74%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358
|| ||||| || ||||| ||||| || ||||| ||||||||||| | ||| |||
Sbjct 1283 GCAATTGGAATTGATTTGGGAACCACATACTCCTGTGTTGGTGTCTTTCAACATGGAAAA 1342
Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418
||||| || || | || ||||||||||| |||||||| || || || || || |||
Sbjct 1343 GTAGAAATAATTGCCAACGACCAAGGAAATCGTACAACACCCAGTTATGTGGCATTCACA 1402
Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCA 195456
||| || ||| | |||| |||||||| ||||||||
Sbjct 1403 GATTCAGAGCGTTTGATTGGTGATGCCGCCAAAAATCA 1440
>seq1985
Length=11301
Score = 91.5 bits (100), Expect = 2e-13
Identities = 132/184 (72%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 195656 TTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTT 195715
|| ||||| ||||| | |||||||| || | || | | || | ||| || |||
Sbjct 1501 TTAATTAAAATGAAAAAAGCTGCGGAAGATTATTTAGGCGAGAAAGTTACAGACGCTGTT 1560
Query 195716 GTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT 195775
| ||||| || ||||| || | ||| | ||| | || || ||||| ||||||| |
Sbjct 1561 ATAACTGTTCCAGCTTATTTTAACGATGCTCAAAGGCAAGCAACAAAAGACGCTGGTAAA 1620
Query 195776 ATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834
||||| ||||| || ||| | |||||||| ||||||||||| || |||||| |||| |
Sbjct 1621 ATTGCAGGTCTTAA-TGTGCAAAGAATTATAAATGAACCAACTGCTGCTGCACTTGCATT 1679
Query 195835 TGGT 195838
||||
Sbjct 1680 TGGT 1683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657607075379280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |