Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_020873.1 Length=158621 Score E Sequences producing significant alignments: (Bits) Value seq9887 86.0 6e-12 seq2410 84.2 2e-11 >seq9887 Length=3258 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/187 (73%), Gaps = 15/187 (8%) Strand=Plus/Minus Query 157596 ACGGGACTCGAACCCGTTTC-TCTTGCGTGACAGGCAAGTGTGTTAACCCA-TATACTAA 157653 |||||| | ||||||| | |||| ||||||||||||| || ||||| | | |||| Sbjct 3127 ACGGGATTTGAACCCGCGACCTCTTACGTGACAGGCAAGCGTTCTAACCAACTGAACTA- 3069 Query 157654 CAAGCCATTAATGGTGCCGACTGTAGGAATCGAACCCACGACCTACTGCT-TACAAGGCA 157712 | ||| |||||| || ||||| |||||||| ||||| ||| | | ||| || Sbjct 3068 ----CTATTCTTGGTGCAAACAGTAGGGATCGAACCTACGACACTCTGATCTTCAA-TCA 3014 Query 157713 GTCGCTCTAACCAACTGAGCT--AAGAAGGCAA-ATTGGAGGGACATGTCGGAATCGAAC 157769 | ||||| |||||||||||| ||||| ||| |||| | | |||||||| |||||| Sbjct 3013 GATGCTCT-ACCAACTGAGCTACAAGAA--CAATTTTGGGGTAATATGTCGGACTCGAAC 2957 Query 157770 CGACCTC 157776 |||| || Sbjct 2956 CGACATC 2950 >seq2410 Length=3205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 157677 TAGGAATCGAACCCACGACCTACTGCTTACAAGGCAGTCGCTCTAACCAACTGAGCTAAG 157736 ||||| ||||||| | ||||||||||||| |||||||| |||||| ||||||||||||| Sbjct 937 TAGGATTCGAACCTATGACCTACTGCTTAGAAGGCAGTTGCTCTATCCAACTGAGCTAAC 878 Query 157737 AAGGCA 157742 || ||| Sbjct 877 AACGCA 872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507262248741240