Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 118 2e-21
>seq12187
Length=3570
Score = 118 bits (130), Expect = 2e-21
Identities = 467/728 (64%), Gaps = 17/728 (2%)
Strand=Plus/Minus
Query 17972 AATTCGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTC 18031
|||||| | ||| | ||| || ||||| || | ||||| ||||| | | |||||||
Sbjct 1734 AATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTC 1675
Query 18032 ATACCTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGAC 18091
|| || | || | | ||| || |||||| | | ||| |||| ||||| | |||| |
Sbjct 1674 ATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCC 1615
Query 18092 TCTTTTATTATGTTTATTACCCTAGATTTTGGCAA--TTTATTAATTATGTGATTATAAT 18149
|| ||| || | | || | | | | | | ||| | | | || || ||
Sbjct 1614 TCACATATGATTTCAAGTATGC--GCTCACGACTAGGTTTCTGCACCAAATGTTTG-AAC 1558
Query 18150 ATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAA 18209
|| | |||| ||||| ||| || || ||||| || | || || | || || |
Sbjct 1557 ATCA--AACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGA 1500
Query 18210 ACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAG 18269
| || | || ||||| | ||| | ||| || ||||| || || || |||||||| | |
Sbjct 1499 ATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCAC 1440
Query 18270 AAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGT---ATT 18326
||||| ||||||||||| || || ||||| | | ||| ||||| || |||
Sbjct 1439 TGAAGAAAATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATT 1380
Query 18327 TATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCT 18386
| | | || ||||| ||||| || | | | | || | | |
Sbjct 1379 TC--GATGAG-ATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTT 1323
Query 18387 CTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACA 18446
| || || ||||| | | ||| || ||| | || ||| || ||||| || || |
Sbjct 1322 CAATGGCGTTAAATAGAAAATCACGTTGTTTTGTGTCACGTATGTAGGTGTCAATCAAAA 1263
Query 18447 AAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAG 18506
||||||||||| || | ||||||| || || || |||| |||||| | | |
Sbjct 1262 TGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCG 1203
Query 18507 CCTCGGGATATTGAA--TCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACC 18564
|||| | ||| | ||| | ||| || |||||||||| ||||| || || ||
Sbjct 1202 CCTCAGTTATTTGTACTTCTTGGCTGAAACGCT--CTACCAAATTTTCATTGACAATGCC 1145
Query 18565 GTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAG 18624
|||| | ||||||||||||||||||| || ||||| | |||||||| | |
Sbjct 1144 ATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAA 1085
Query 18625 ATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGA 18684
|| | ||| |||| ||||| || ||| ||| ||||| ||| ||||||||| || |
Sbjct 1084 TTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGC 1025
Query 18685 TTCGGCCT 18692
||||||||
Sbjct 1024 TTCGGCCT 1017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731587951328400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |