Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq12187 118 2e-21 >seq12187 Length=3570 Score = 118 bits (130), Expect = 2e-21 Identities = 467/728 (64%), Gaps = 17/728 (2%) Strand=Plus/Minus Query 17972 AATTCGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTC 18031 |||||| | ||| | ||| || ||||| || | ||||| ||||| | | ||||||| Sbjct 1734 AATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTC 1675 Query 18032 ATACCTAGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGAC 18091 || || | || | | ||| || |||||| | | ||| |||| ||||| | |||| | Sbjct 1674 ATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCC 1615 Query 18092 TCTTTTATTATGTTTATTACCCTAGATTTTGGCAA--TTTATTAATTATGTGATTATAAT 18149 || ||| || | | || | | | | | | ||| | | | || || || Sbjct 1614 TCACATATGATTTCAAGTATGC--GCTCACGACTAGGTTTCTGCACCAAATGTTTG-AAC 1558 Query 18150 ATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAA 18209 || | |||| ||||| ||| || || ||||| || | || || | || || | Sbjct 1557 ATCA--AACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGA 1500 Query 18210 ACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAG 18269 | || | || ||||| | ||| | ||| || ||||| || || || |||||||| | | Sbjct 1499 ATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCAC 1440 Query 18270 AAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGT---ATT 18326 ||||| ||||||||||| || || ||||| | | ||| ||||| || ||| Sbjct 1439 TGAAGAAAATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATT 1380 Query 18327 TATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCT 18386 | | | || ||||| ||||| || | | | | || | | | Sbjct 1379 TC--GATGAG-ATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTT 1323 Query 18387 CTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACA 18446 | || || ||||| | | ||| || ||| | || ||| || ||||| || || | Sbjct 1322 CAATGGCGTTAAATAGAAAATCACGTTGTTTTGTGTCACGTATGTAGGTGTCAATCAAAA 1263 Query 18447 AAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAG 18506 ||||||||||| || | ||||||| || || || |||| |||||| | | | Sbjct 1262 TGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCG 1203 Query 18507 CCTCGGGATATTGAA--TCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACC 18564 |||| | ||| | ||| | ||| || |||||||||| ||||| || || || Sbjct 1202 CCTCAGTTATTTGTACTTCTTGGCTGAAACGCT--CTACCAAATTTTCATTGACAATGCC 1145 Query 18565 GTCAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAG 18624 |||| | ||||||||||||||||||| || ||||| | |||||||| | | Sbjct 1144 ATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAA 1085 Query 18625 ATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGA 18684 || | ||| |||| ||||| || ||| ||| ||||| ||| ||||||||| || | Sbjct 1084 TTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGC 1025 Query 18685 TTCGGCCT 18692 |||||||| Sbjct 1024 TTCGGCCT 1017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731587951328400