Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 116 7e-21
>seq12187
Length=3570
Score = 116 bits (128), Expect = 7e-21
Identities = 354/546 (65%), Gaps = 16/546 (3%)
Strand=Plus/Minus
Query 49818 ATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAA 49877
|| ||||| ||||| ||| ||| || || ||||| | || || | ||||| ||
Sbjct 1557 ATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAAT 1498
Query 49878 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 49937
|| | || ||||| | || | || |||||||| || || || || ||||| | |
Sbjct 1497 GTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTG 1438
Query 49938 AAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCA 49997
||||| |||||||| ||| ||||||||||| || | | ||||| ||| ||
Sbjct 1437 AAGAAAATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAA-ATTGGCCGATT- 1380
Query 49998 TCTA--ATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 50055
|| | | ||||| || |||||||| || || || || | || ||| | |||| |
Sbjct 1379 TCGATGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAA 1320
Query 50056 TAGCTTTAAATA---ATTCA--tttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAA 50110
| || ||||||| | ||| || |||| || ||
Sbjct 1319 TGGCGTTAAATAGAAAATCACGTTGTTTT-----GTGTCACGTATGTAGGTGTCAATCAA 1265
Query 50111 TAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCT 50170
| ||||||||||| || ||| |||||| || ||||| || |||||| |
Sbjct 1264 AATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACG 1205
Query 50171 TGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACC 50230
|| || | || ||||| ||| || || || ||||| ||| ||||| ||
Sbjct 1204 CGCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCC 1145
Query 50231 ATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAA 50290
|||||| || ||||| ||||| ||||| | |||||||| | ||||||||| | ||
Sbjct 1144 ATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAA 1085
Query 50291 ATTTTCCCAAG-ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATG 50349
|||||||| ||||| ||| || ||||||| ||||| || | |||||||||||| |
Sbjct 1084 TTTTTCCCAGTCATTCAT-ATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAG 1026
Query 50350 CTACGG 50355
|| |||
Sbjct 1025 CTTCGG 1020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984088358781150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |