Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq12187 116 7e-21 >seq12187 Length=3570 Score = 116 bits (128), Expect = 7e-21 Identities = 354/546 (65%), Gaps = 16/546 (3%) Strand=Plus/Minus Query 49818 ATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAA 49877 || ||||| ||||| ||| ||| || || ||||| | || || | ||||| || Sbjct 1557 ATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAAT 1498 Query 49878 GTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAA 49937 || | || ||||| | || | || |||||||| || || || || ||||| | | Sbjct 1497 GTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTG 1438 Query 49938 AAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCA 49997 ||||| |||||||| ||| ||||||||||| || | | ||||| ||| || Sbjct 1437 AAGAAAATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAA-ATTGGCCGATT- 1380 Query 49998 TCTA--ATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTA 50055 || | | ||||| || |||||||| || || || || | || ||| | |||| | Sbjct 1379 TCGATGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAA 1320 Query 50056 TAGCTTTAAATA---ATTCA--tttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAA 50110 | || ||||||| | ||| || |||| || || Sbjct 1319 TGGCGTTAAATAGAAAATCACGTTGTTTT-----GTGTCACGTATGTAGGTGTCAATCAA 1265 Query 50111 TAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCT 50170 | ||||||||||| || ||| |||||| || ||||| || |||||| | Sbjct 1264 AATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACG 1205 Query 50171 TGCTTCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACC 50230 || || | || ||||| ||| || || || ||||| ||| ||||| || Sbjct 1204 CGCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCC 1145 Query 50231 ATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAA 50290 |||||| || ||||| ||||| ||||| | |||||||| | ||||||||| | || Sbjct 1144 ATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAA 1085 Query 50291 ATTTTCCCAAG-ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATG 50349 |||||||| ||||| ||| || ||||||| ||||| || | |||||||||||| | Sbjct 1084 TTTTTCCCAGTCATTCAT-ATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAG 1026 Query 50350 CTACGG 50355 || ||| Sbjct 1025 CTTCGG 1020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984088358781150