Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5439 122 3e-22 seq24243 96.9 1e-14 seq1845 96.9 1e-14 >seq5439 Length=6394 Score = 122 bits (134), Expect = 3e-22 Identities = 219/317 (69%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 ||||| ||||||||||| ||||| || | | ||| |||| | || || || |||| | Sbjct 2102 CCAACTGCATCAATTTCATCAATAAATAATATACATGGAGCGTGTTTTCGAGCCATTGAA 2043 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || | || | ||||| |||| ||| | ||| ||| ||||||| | ||||||||| | Sbjct 2042 AACATATCACGAACACGAGATGGTCCGACACCGACAAACATTTCCAAAAATTCAGATCCA 1983 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 ||||| || || | ||||||||||| |||||| ||| |||||| | ||| || Sbjct 1982 GATACAGTTATAAAAGGAACATTTGCTTCTCCTGCTGTCGCCTTCGCCAACATTGTTTTG 1923 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAA---CTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 || || || ||||| |||| | ||| | | || ||||| | ||| || || | Sbjct 1922 CCAGTACCTGGTGG-CCCTGT--TAGCATGGCGCCTTTTGGAATTTTCGCACCTAATTCC 1866 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 ||| | | |||| | || ||||| | ||||| |||| | |||| ||||| || Sbjct 1865 ACATACTGATTAGGGTTTTTCAAAAAGTTTACAAATTCCATTATTTCAATCTTTGCTTCT 1806 Query 289327 TCACATCCTGCTACATC 289343 ||||| || || ||||| Sbjct 1805 TCACAGCCGGCAACATC 1789 >seq24243 Length=2007 Score = 96.9 bits (106), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 60134 GATAATTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTT 60193 || |||| |||||||||||| | | | ||||| || || ||||| | | ||| || Sbjct 1408 GACAATTTTGTGAAAATATAACGCGCACTGGCTGCATCTTTACCACCAGTTAAACGTGTG 1349 Query 60194 CCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCG 60253 |||||||| || ||||| || |||||||| || || |||||||| || || || || Sbjct 1348 CCAAATTGACCACGTGGCTCCAACAGATTAATATTATTGGAGCCTACAAAGTTCTGTGCC 1289 Query 60254 AGACCAACAATAGCACCATT--TAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTG 60311 | | |||||||| |||| ||| |||||||||||||||| | || | ||| | Sbjct 1288 AAATTAACAATAG--TCATTTGTAAGGACACTTCACCGTGATGATAGGCGGACTTTTCAG 1231 Query 60312 AAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 || | ||| |||||||| ||||| | ||| Sbjct 1230 CCACCGAACCAGACAATTGTGCCACTTTCACTTC 1197 >seq1845 Length=2059 Score = 96.9 bits (106), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 60134 GATAATTGTGTGAAAATATACCTCTCGGATGCTGCGTCCTTGCCACCCATAAGACGGGTT 60193 || |||| |||||||||||| | | | ||||| || || ||||| | | ||| || Sbjct 1705 GACAATTTTGTGAAAATATAACGCGCACTGGCTGCATCTTTACCACCAGTTAAACGTGTG 1646 Query 60194 CCAAATTGTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCG 60253 |||||||| || ||||| || |||||||| || || |||||||| || || || || Sbjct 1645 CCAAATTGACCACGTGGCTCCAACAGATTAATATTATTGGAGCCTACAAAGTTCTGTGCC 1586 Query 60254 AGACCAACAATAGCACCATT--TAAACTGGCTTCACCGTGATGATATCCAGAATGTTCTG 60311 | | |||||||| |||| ||| |||||||||||||||| |||| | ||| | Sbjct 1585 AAATTAACAATAG--TCATTTGTAAGGACACTTCACCGTGATGATAGGCAGACTTTTCAG 1528 Query 60312 AAACATATCCACTGAATTGTGCGACTTTAATTTC 60345 || | ||| |||||||| || || | ||| Sbjct 1527 CCACCGAACCAGACAATTGTGCCACCTTCACTTC 1494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471232088421513