Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_021529.2 Length=247511 Score E Sequences producing significant alignments: (Bits) Value seq2789 93.3 7e-14 seq20180 89.7 8e-13 >seq2789 Length=15484 Score = 93.3 bits (102), Expect = 7e-14 Identities = 172/250 (69%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 171958 AAAGAAAACGCGAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTAGCAGGT 172017 || ||||| || |||||||| || || || || || | || ||| |||| ||| Sbjct 3883 AATGAAAATGCTAATAAAGATAGCAATGTTATTCCAACTCAAAGAGATTTGTTAGCTGGT 3824 Query 172018 ACAGTTGCGAAACAATACGC----ACTCGAAGACTTTCTACCGAAGCACATTGCAGAAGC 172073 | | || | ||||| || || | || | |||| | | ||| || | | || || Sbjct 3823 ATAATTTCTAAACATTATGCTAAAAATCATATACTTCCCA---AAG-ACGTAGTTGACGC 3768 Query 172074 ACATATAAGTGGCGATATTCATTTTCATGATTTAGATTACAGTCCATTATTTCCGCAATT 172133 ||| || || || ||||||| ||||||||||||||| ||||| ||||| || Sbjct 3767 TCATGAAAAAGGTGAAATTCATTATCATGATTTAGATTATTCACCATTTTTTCCAATGTT 3708 Query 172134 CAACTGTATGCTTATTGATATCAAAGGCATGCTTGAAAACGGATTTAAAATGGGTAATGC 172193 || |||||| | ||||| | ||||| ||||||||| || |||||||| || ||||| Sbjct 3707 TAATTGTATGTTAGTTGATTTAAAAGGAATGCTTGAAGGTGGCTTTAAAATAGGAAATGC 3648 Query 172194 TGAGATCGAA 172203 ||| || ||| Sbjct 3647 TGAAATTGAA 3638 >seq20180 Length=6579 Score = 89.7 bits (98), Expect = 8e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 94236 TGGTGGAAATGACGAGACTCGAACTCGCAACCTCCTACTTGCAAGGCAGGTGCTCTCCCA 94295 ||||||| | ||||||| ||||||||| |||| ||||||||||||||| | ||| ||| Sbjct 4404 TGGTGGAGAAGACGAGATTCGAACTCGTGACCTTCTACTTGCAAGGCAGACGTTCTACCA 4463 Query 94296 ATTGAGCTACATCCCCATT 94314 | ||| ||||||||||||| Sbjct 4464 ACTGAACTACATCCCCATT 4482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791599850916840