Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_021529.2
Length=247511
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 93.3 7e-14
seq20180 89.7 8e-13
>seq2789
Length=15484
Score = 93.3 bits (102), Expect = 7e-14
Identities = 172/250 (69%), Gaps = 8/250 (3%)
Strand=Plus/Minus
Query 171958 AAAGAAAACGCGAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTAGCAGGT 172017
|| ||||| || |||||||| || || || || || | || ||| |||| |||
Sbjct 3883 AATGAAAATGCTAATAAAGATAGCAATGTTATTCCAACTCAAAGAGATTTGTTAGCTGGT 3824
Query 172018 ACAGTTGCGAAACAATACGC----ACTCGAAGACTTTCTACCGAAGCACATTGCAGAAGC 172073
| | || | ||||| || || | || | |||| | | ||| || | | || ||
Sbjct 3823 ATAATTTCTAAACATTATGCTAAAAATCATATACTTCCCA---AAG-ACGTAGTTGACGC 3768
Query 172074 ACATATAAGTGGCGATATTCATTTTCATGATTTAGATTACAGTCCATTATTTCCGCAATT 172133
||| || || || ||||||| ||||||||||||||| ||||| ||||| ||
Sbjct 3767 TCATGAAAAAGGTGAAATTCATTATCATGATTTAGATTATTCACCATTTTTTCCAATGTT 3708
Query 172134 CAACTGTATGCTTATTGATATCAAAGGCATGCTTGAAAACGGATTTAAAATGGGTAATGC 172193
|| |||||| | ||||| | ||||| ||||||||| || |||||||| || |||||
Sbjct 3707 TAATTGTATGTTAGTTGATTTAAAAGGAATGCTTGAAGGTGGCTTTAAAATAGGAAATGC 3648
Query 172194 TGAGATCGAA 172203
||| || |||
Sbjct 3647 TGAAATTGAA 3638
>seq20180
Length=6579
Score = 89.7 bits (98), Expect = 8e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 94236 TGGTGGAAATGACGAGACTCGAACTCGCAACCTCCTACTTGCAAGGCAGGTGCTCTCCCA 94295
||||||| | ||||||| ||||||||| |||| ||||||||||||||| | ||| |||
Sbjct 4404 TGGTGGAGAAGACGAGATTCGAACTCGTGACCTTCTACTTGCAAGGCAGACGTTCTACCA 4463
Query 94296 ATTGAGCTACATCCCCATT 94314
| ||| |||||||||||||
Sbjct 4464 ACTGAACTACATCCCCATT 4482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 791599850916840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |