Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_021782.1 Length=72098 Score E Sequences producing significant alignments: (Bits) Value seq1262 87.8 8e-13 seq4088 86.0 3e-12 >seq1262 Length=72559 Score = 87.8 bits (96), Expect = 8e-13 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 63112 ATGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCTTATAGCTGTACGAGTTC 63171 |||||| ||| ||||||||||||||||||||||||||||| ||||| | ||| || |||| Sbjct 64750 ATGGTGGAATTGGTAGACACAAGGGATTTAAAATCCCTCGCCTTATCGGTGTGCGGGTTC 64691 Query 63172 GAGTCTCG 63179 ||||| || Sbjct 64690 GAGTCCCG 64683 >seq4088 Length=5036 Score = 86.0 bits (94), Expect = 3e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 63113 TGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCTTATAGCTGTACGAGTTCG 63172 ||||| ||| ||||||||||||||||||||||||||||| ||||| | ||| || ||||| Sbjct 4421 TGGTGGAATTGGTAGACACAAGGGATTTAAAATCCCTCGCCTTATCGGTGTGCGGGTTCG 4480 Query 63173 AGTCTCG 63179 |||| || Sbjct 4481 AGTCCCG 4487 Score = 86.0 bits (94), Expect = 3e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 63113 TGGTGAAATCGGTAGACACAAGGGATTTAAAATCCCTCGGCTTATAGCTGTACGAGTTCG 63172 ||||| ||| ||||||||||||||||||||||||||||| ||||| | ||| || ||||| Sbjct 4969 TGGTGGAATTGGTAGACACAAGGGATTTAAAATCCCTCGCCTTATCGGTGTGCGGGTTCG 5028 Query 63173 AGTCTCG 63179 |||| || Sbjct 5029 AGTCCCG 5035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230501542964251