Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_021857.1
Length=41475
Score E
Sequences producing significant alignments: (Bits) Value
seq3548 183 8e-42
seq6609 109 1e-19
seq27062 100 8e-17
>seq3548
Length=8984
Score = 183 bits (202), Expect = 8e-42
Identities = 438/656 (67%), Gaps = 44/656 (7%)
Strand=Plus/Minus
Query 39707 CTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGCAAGCCAGCGTCCCATCTG 39766
|||||||||| | | |||||||| |||| ||| | || || ||||| | ||||| |
Sbjct 7518 CTGACAGCTGGCGATGTCCAGCTCTGTCATTAGCTTACCGGCCAGCCAATGCCCCATTTT 7459
Query 39767 GTAGCC----TCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCGTGGC 39822
| ||| || |||||| | || | |||||||||| || ||||| || ||| ||
Sbjct 7458 GACGCCGGAGTC-CCGGGTAACGATGCTCGCGATGCTTCGGGCGCCGGCAGAGCCGCCGC 7400
Query 39823 TGATG--CCATGTAGCTCAAGTACCTGACTGCGTA-ATACAGCCCGTCTGCCGTCTGGTT 39879
|| || ||| | ||| | ||||| |||||| | || | || |||||||| |
Sbjct 7399 TGGTGTTCCAGGC--CTCCATGACCTGGCTGCGTTTAGTCACGCGCTCC-CCGTCTGGCT 7343
Query 39880 TTTCAGGACGGTTTTT-CCAGTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAG 39938
| || || | |||||| ||||||||||||||||| ||| || |||||
Sbjct 7342 CATT-GGCCGAAGCCTGCCAGTACCTGTAGCTGCTGCGATGTACCTTAAAAGTCTGGCAC 7284
Query 39939 AGT---GTGACCATAGGATAATGCGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGG 39995
|| |||||| || || |||| || || | ||| || | ||| ||| || |
Sbjct 7283 AGGATGGTGACC---GGGTATCGCGCCCTCAGCCTGTCGACTACAGTAAACCGTTGAGTG 7227
Query 39996 AGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCTCCATTTCAATGCGTT 40055
|||| ||||| |||||||| |||||||||||||||||||| || |||||||||| |||||
Sbjct 7226 AGTCCGACATTAAGAGCGCCGTAGCCTTTTTTAATATTTCGTTTTCCATTTCAAGGCGTT 7167
Query 40056 GTAGCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTG 40115
||| |||||| | | |||||| | || | || | |
Sbjct 7166 GTATTTTTTTCTTCATCTCACGCAGCTCGAGCTG---------------------CTNAG 7128
Query 40116 GTGTTTTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGC 40175
|| |||| || || ||||| | |||| |||||||| | || | | || |||
Sbjct 7127 GTTTTTTACCTTGTCGCTCCAGCCTGAGTTTATTGACCCAGCGAGTAAGAGCCGACTGGC 7068
Query 40176 CAACATCCATAGCTTTGGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAG 40235
||| | |||| |||||| | || | ||||| ||||| |||||||||| |
Sbjct 7067 TGACACTAACCGCTTCGGCGGCTTTAGCAAATGTGTAGCCGTGGTCGACAACCAGTTTTG 7008
Query 40236 CGGATTCGCGTTTAAACTCTGCGCTAAAATTTCtttttttCATTGGAGCACCTGTGTTGT 40295
| | |||| | ||||| || || | |||| ||| |||| |||||||||| |||
Sbjct 7007 CAGCTTCGAGCTTAAATTCAGCCGTGAAAT---GTTTAGCCATTTGAGCACCTGTTGTGT 6951
Query 40296 TCT-GAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCA 40350
| | ||||||||||||||||| | | ||||||||| ||||| ||||||| ||
Sbjct 6950 AGTGGGGGTGAGCATATCACCTCCGATTAGGTGGCCAGTATCAGTATGCCACTACA 6895
>seq6609
Length=13971
Score = 109 bits (120), Expect = 1e-19
Identities = 208/300 (69%), Gaps = 6/300 (2%)
Strand=Plus/Plus
Query 23371 TTATGATGTATTTGGGTCTATTTTTTACTTCAATATAGATTCTACCTATATATTCTCCGA 23430
|||| || ||||||||||||||||| |||||| |||| ||||| |||||||||||||| |
Sbjct 5615 TTATAATATATTTGGGTCTATTTTTAACTTCATTATATATTCTTCCTATATATTCTCCCA 5674
Query 23431 GAACACCAATCCCGATCAGTTGCACTCCACCCAAGAAAAGT-ATTGATACAAGCAGGGAG 23489
|| || | || || | ||| | |||| || | ||| || |||| ||||| | ||
Sbjct 5675 TTACTCCTAATCCTATTAATTGTATTCCA-CCTATAAATGTAATTGCTACAAATAAAGAC 5733
Query 23490 GGAT-ACCCGC-GTACTGGGTTACCAAAGACAAGGGTGTCTATAATCATCCATGCACCAT 23547
|||| ||| || || | || ||||| | | | |||||||| || |||
Sbjct 5734 GGATAACCAGCAATATT--ATTTCCAAATAACATTTTATCTATAATTATTTTAAATCCAA 5791
Query 23548 ATAAAAATGAAATGCTTGCAACAAACAAGCCTATATAAGTCCATACGCGAAGAGGAAAGG 23607
| | ||| ||||| || | || || || || ||| ||||| | ||| |||| |
Sbjct 5792 AAATAAAAGAAATAGAGGCCATTAAAAATCCGATGTAACACCATATTCTAAGTGGAATTG 5851
Query 23608 TTGAAAAACTTGTGATACCTTCCAGTGCCAGATTCCATAATTTCCAGCCATTAAATTTTG 23667
| ||| || || ||||| | |||| ||||||||| ||||| ||||||||||||
Sbjct 5852 TGCTAAATGAAGTTATTCCTTCTACCGCCAAATTCCATAACTTCCATGCATTAAATTTTG 5911
>seq27062
Length=1613
Score = 100 bits (110), Expect = 8e-17
Identities = 96/123 (78%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 23654 GCCATTAAATTTTGAGATGCCAGCAACACGCTCTGCGCGTACATATTCCACGACATCCGT 23713
|||||| || |||||| ||||| ||||| || || || ||||| || |||| |||
Sbjct 1613 GCCATTGAACTTTGAGGCCCCAGCTACACGTTCAGCACGGACATACTCAACGATATCGAC 1554
Query 23714 CTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAAGATTGCGCTCAGGCAACAGTTT 23773
| ||| |||||||||||||| | || |||||||| |||||||||||||||| ||||
Sbjct 1553 ATTACCCCCCACCCAGCTCAGAACCCCCTTCATGAAGAGATTGCGCTCAGGCATACGTTT 1494
Query 23774 AAT 23776
|||
Sbjct 1493 AAT 1491
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 132549510058306
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |