Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_021857.1 Length=41475 Score E Sequences producing significant alignments: (Bits) Value seq3548 183 8e-42 seq6609 109 1e-19 seq27062 100 8e-17 >seq3548 Length=8984 Score = 183 bits (202), Expect = 8e-42 Identities = 438/656 (67%), Gaps = 44/656 (7%) Strand=Plus/Minus Query 39707 CTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGCAAGCCAGCGTCCCATCTG 39766 |||||||||| | | |||||||| |||| ||| | || || ||||| | ||||| | Sbjct 7518 CTGACAGCTGGCGATGTCCAGCTCTGTCATTAGCTTACCGGCCAGCCAATGCCCCATTTT 7459 Query 39767 GTAGCC----TCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCGTGGC 39822 | ||| || |||||| | || | |||||||||| || ||||| || ||| || Sbjct 7458 GACGCCGGAGTC-CCGGGTAACGATGCTCGCGATGCTTCGGGCGCCGGCAGAGCCGCCGC 7400 Query 39823 TGATG--CCATGTAGCTCAAGTACCTGACTGCGTA-ATACAGCCCGTCTGCCGTCTGGTT 39879 || || ||| | ||| | ||||| |||||| | || | || |||||||| | Sbjct 7399 TGGTGTTCCAGGC--CTCCATGACCTGGCTGCGTTTAGTCACGCGCTCC-CCGTCTGGCT 7343 Query 39880 TTTCAGGACGGTTTTT-CCAGTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAG 39938 | || || | |||||| ||||||||||||||||| ||| || ||||| Sbjct 7342 CATT-GGCCGAAGCCTGCCAGTACCTGTAGCTGCTGCGATGTACCTTAAAAGTCTGGCAC 7284 Query 39939 AGT---GTGACCATAGGATAATGCGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGG 39995 || |||||| || || |||| || || | ||| || | ||| ||| || | Sbjct 7283 AGGATGGTGACC---GGGTATCGCGCCCTCAGCCTGTCGACTACAGTAAACCGTTGAGTG 7227 Query 39996 AGTCTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCTCCATTTCAATGCGTT 40055 |||| ||||| |||||||| |||||||||||||||||||| || |||||||||| ||||| Sbjct 7226 AGTCCGACATTAAGAGCGCCGTAGCCTTTTTTAATATTTCGTTTTCCATTTCAAGGCGTT 7167 Query 40056 GTAGCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTG 40115 ||| |||||| | | |||||| | || | || | | Sbjct 7166 GTATTTTTTTCTTCATCTCACGCAGCTCGAGCTG---------------------CTNAG 7128 Query 40116 GTGTTTTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGC 40175 || |||| || || ||||| | |||| |||||||| | || | | || ||| Sbjct 7127 GTTTTTTACCTTGTCGCTCCAGCCTGAGTTTATTGACCCAGCGAGTAAGAGCCGACTGGC 7068 Query 40176 CAACATCCATAGCTTTGGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAG 40235 ||| | |||| |||||| | || | ||||| ||||| |||||||||| | Sbjct 7067 TGACACTAACCGCTTCGGCGGCTTTAGCAAATGTGTAGCCGTGGTCGACAACCAGTTTTG 7008 Query 40236 CGGATTCGCGTTTAAACTCTGCGCTAAAATTTCtttttttCATTGGAGCACCTGTGTTGT 40295 | | |||| | ||||| || || | |||| ||| |||| |||||||||| ||| Sbjct 7007 CAGCTTCGAGCTTAAATTCAGCCGTGAAAT---GTTTAGCCATTTGAGCACCTGTTGTGT 6951 Query 40296 TCT-GAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCA 40350 | | ||||||||||||||||| | | ||||||||| ||||| ||||||| || Sbjct 6950 AGTGGGGGTGAGCATATCACCTCCGATTAGGTGGCCAGTATCAGTATGCCACTACA 6895 >seq6609 Length=13971 Score = 109 bits (120), Expect = 1e-19 Identities = 208/300 (69%), Gaps = 6/300 (2%) Strand=Plus/Plus Query 23371 TTATGATGTATTTGGGTCTATTTTTTACTTCAATATAGATTCTACCTATATATTCTCCGA 23430 |||| || ||||||||||||||||| |||||| |||| ||||| |||||||||||||| | Sbjct 5615 TTATAATATATTTGGGTCTATTTTTAACTTCATTATATATTCTTCCTATATATTCTCCCA 5674 Query 23431 GAACACCAATCCCGATCAGTTGCACTCCACCCAAGAAAAGT-ATTGATACAAGCAGGGAG 23489 || || | || || | ||| | |||| || | ||| || |||| ||||| | || Sbjct 5675 TTACTCCTAATCCTATTAATTGTATTCCA-CCTATAAATGTAATTGCTACAAATAAAGAC 5733 Query 23490 GGAT-ACCCGC-GTACTGGGTTACCAAAGACAAGGGTGTCTATAATCATCCATGCACCAT 23547 |||| ||| || || | || ||||| | | | |||||||| || ||| Sbjct 5734 GGATAACCAGCAATATT--ATTTCCAAATAACATTTTATCTATAATTATTTTAAATCCAA 5791 Query 23548 ATAAAAATGAAATGCTTGCAACAAACAAGCCTATATAAGTCCATACGCGAAGAGGAAAGG 23607 | | ||| ||||| || | || || || || ||| ||||| | ||| |||| | Sbjct 5792 AAATAAAAGAAATAGAGGCCATTAAAAATCCGATGTAACACCATATTCTAAGTGGAATTG 5851 Query 23608 TTGAAAAACTTGTGATACCTTCCAGTGCCAGATTCCATAATTTCCAGCCATTAAATTTTG 23667 | ||| || || ||||| | |||| ||||||||| ||||| |||||||||||| Sbjct 5852 TGCTAAATGAAGTTATTCCTTCTACCGCCAAATTCCATAACTTCCATGCATTAAATTTTG 5911 >seq27062 Length=1613 Score = 100 bits (110), Expect = 8e-17 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 23654 GCCATTAAATTTTGAGATGCCAGCAACACGCTCTGCGCGTACATATTCCACGACATCCGT 23713 |||||| || |||||| ||||| ||||| || || || ||||| || |||| ||| Sbjct 1613 GCCATTGAACTTTGAGGCCCCAGCTACACGTTCAGCACGGACATACTCAACGATATCGAC 1554 Query 23714 CTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAAGATTGCGCTCAGGCAACAGTTT 23773 | ||| |||||||||||||| | || |||||||| |||||||||||||||| |||| Sbjct 1553 ATTACCCCCCACCCAGCTCAGAACCCCCTTCATGAAGAGATTGCGCTCAGGCATACGTTT 1494 Query 23774 AAT 23776 ||| Sbjct 1493 AAT 1491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132549510058306