Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2021 338 6e-88 seq4853 264 1e-65 >seq2021 Length=2943 Score = 338 bits (374), Expect = 6e-88 Identities = 980/1495 (66%), Gaps = 60/1495 (4%) Strand=Plus/Minus Query 138156 ATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCCGT 138215 ||| |||||||| | ||| |||| || ||||| ||||| | || ||||||||| || || Sbjct 2150 ATCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGT 2091 Query 138216 TTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGGTTT 138275 || || || || ||| |||| | ||||| || || ||| | ||| |||| | Sbjct 2090 CTTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTC 2031 Query 138276 CGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCCAT 138335 |||| | |||||||||||||||||| ||||| || ||||| || |||||| ||||| Sbjct 2030 AGCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCAT 1971 Query 138336 GTTAATTAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATATGTCG 138395 ||||| | | ||| |||||||| || |||||||| | ||||| | ||| | Sbjct 1970 TTTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTG 1911 Query 138396 CGGTATTGTTGCAATATTTTGAAT-GCTCC-CGTTGGCCGCAATGATGCGATTTCTCATG 138453 |||||| |||||||||| || | ||| |||| | | || || |||| |||| Sbjct 1910 CGGTATACGCTCAATATTTTGTATGGATCCACGTT--CAGATATAATATCATTTTTCATA 1853 Query 138454 TCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGACCTGA 138513 ||||| | | |||| | || | |||| || || || || || | ||||| Sbjct 1852 TCATCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGG 1793 Query 138514 AATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCG 138573 |||||||| | |||||| ||||| || || || || |||||||||| ||||| Sbjct 1792 AATTCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCA 1733 Query 138574 TTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTC 138633 || || |||| || || || |||| || || ||||| || | | | |||||| Sbjct 1732 TTATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTA 1673 Query 138634 CGTAAACC--GTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGCTAG 138691 || | || || ||| ||| ||||| ||| || ||| | ||| | ||| ||| Sbjct 1672 CGCACGCCATGTTTAGC--AATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAG 1615 Query 138692 GTTTTTTGTTCCACATATCGTACTGTAACATTCC----CAAACTTGCGGGACTGC----- 138742 || |||| | ||||||||| |||||||| ||||| | || ||| | | || Sbjct 1614 GTGTTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAG 1555 Query 138743 CTTCGTA--------CGAA------TCGTATACACCAAACTCTTGCGCCAACTCGTTGCT 138788 ||| || || | || || ||| | || | |||||||| ||| Sbjct 1554 TTTCATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCT 1495 Query 138789 CGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGC---AATCGGGC 138845 || || | |||||||| ||||| ||||| || || ||||| ||| ||| || Sbjct 1494 GGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAAT---GC 1438 Query 138846 CTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCC 138905 || | || || || || || | | | || || || || | ||||| ||||| Sbjct 1437 TTCCTCACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCC 1378 Query 138906 CACTCCGACAGGGCGATGGCGCAGATTTG-ACGCTTTTGCGGCTTCG--ATAGGATAATA 138962 | || | || ||||| |||| ||||| |||||| | || || | || || || Sbjct 1377 AATACCTATGGGACGATGACGCATATTTGAACGCTT---GGCCTCCGGCAGCGGGTAGTA 1321 Query 138963 GTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTT-AATC 139021 || | || ||||||||||| ||||| || || | |||| | | |||| | | Sbjct 1320 ATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATTTTAG-CAACTTCTTTGAGTT 1262 Query 139022 GTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAA 139081 || |||||| || || ||||| | | || |||||| | |||| || Sbjct 1261 TTTTAAAATCATAAGT------CTTGTC-TGG-----GTTGACAAACATATTGAGTGCAA 1214 Query 139082 TCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCAC 139141 | ||||||| || || || || | ||| || || | ||||| |||||||| | | Sbjct 1213 TTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGC 1154 Query 139142 ACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCAT 139201 | ||||| || |||||||| || |||| ||| |||||||| || || || |||||||||| Sbjct 1153 ATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCAT 1094 Query 139202 CTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACA 139261 | || || |||||||| || |||||||||||||| || | |||||||||| ||| Sbjct 1093 CCTTATAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACA 1034 Query 139262 AGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTT 139321 || ||||| | || | | | | || ||||| || || || || |||| Sbjct 1033 AGGTTTGAGCTTTAACAGTGCGATTGGCACGACCTTCACGCTCATATTTCTCATAAAGTT 974 Query 139322 CGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCG 139381 |||||| |||||| | | ||| || || | ||||||| || |||||||| | Sbjct 973 GCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTG 914 Query 139382 ACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACA 139441 |||| |||| | |||| || || ||||||| | || || ||||| | ||| | | Sbjct 913 ACCAATCGCCATCTGCCTCCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAA 854 Query 139442 GCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAA 139501 ||||| || || | |||||| || | || |||| | | || |||| Sbjct 853 ATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAA 794 Query 139502 AAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT- 139560 | | || | |||||| ||||| | ||||||||| | |||||| |||||||| ||| Sbjct 793 ATATATCCGAGTGCCAGGGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTC 734 Query 139561 --TGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACC 139613 ||||| |||| || | | |||||||| || |||| ||| ||| | | ||| Sbjct 733 CCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACC 679 >seq4853 Length=2014 Score = 264 bits (292), Expect = 1e-65 Identities = 898/1383 (65%), Gaps = 47/1383 (3%) Strand=Plus/Plus Query 138658 TCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGT 138717 ||||| ||| || ||| | ||| | ||| ||||| |||| | ||||||||| |||||| Sbjct 87 TCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGTGTTTTTTGCCACATATCATACTGT 146 Query 138718 AACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCC 138777 || |||||| || | || ||| | || | || || ||| | || | ||| Sbjct 147 AAAATTCCCTTGCTGACAGGTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCC 206 Query 138778 AACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGC 138837 ||||| ||| || || | |||||||| ||||| ||||| || || ||||| ||| Sbjct 207 AACTCACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGC 266 Query 138838 ---AATCGGGCCTCGGCGCTCTCGTACGGCATGCG---GAGCATCGTGAACGCGTCGGCC 138891 ||| || || | || || || || || ||| ||| || || || || Sbjct 267 TTAAAT---GCTTCCTCACTTTCATATGGATAACGCATGAGTATC---AATGCATCTGCG 320 Query 138892 AGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGA-CGCTTTTGCGGCTTC 138950 | ||||| || || | || | || ||||| |||| |||||| ||||| | || | Sbjct 321 AATCCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACGCTTG---GCCTCC 377 Query 138951 GATAG--GATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTC 139008 | || | || || || | || ||||||||||| ||||| || || | |||| | Sbjct 378 GGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATTTTAG-C 436 Query 139009 GTATGCTTTAA-TCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAA 139067 | |||| | | || |||||| || || ||||| | | || |||||| Sbjct 437 AACTTCTTTGAGTTTTTTAAAATCATAAGTC------TTGTC-TGG-----GTTGACAAA 484 Query 139068 TTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTC 139127 | |||| ||| ||||||| || || || || | ||| || || | ||||| Sbjct 485 CATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTC 544 Query 139128 GACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTT 139187 |||||||| | || ||||| || |||||||| || |||| ||| |||||||| || || Sbjct 545 TACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTT 604 Query 139188 TCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTAT 139247 || ||||||||||| || || |||||||| || ||||||||||||||||| | |||||| Sbjct 605 GCGATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTAT 664 Query 139248 AATGAATTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTA 139307 |||| ||||| ||||| | || | | | | || ||||| || Sbjct 665 AATGGCAAACCACAAGGTTTGAGCTTTAACAGTGCGATTGGCACGACCTTCACGCTCATA 724 Query 139308 CTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTC 139367 || || || |||| |||||| |||||| | | ||| || || | ||||||| Sbjct 725 TTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTG 784 Query 139368 AGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAAT 139427 || |||||||| ||||| |||| | |||| || || ||||||||| || || || Sbjct 785 TGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTAT 844 Query 139428 CCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCAT 139487 ||||| ||| | | ||||| || || | |||||| || | || |||| Sbjct 845 CCACAGAGCATAGAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAA 904 Query 139488 GTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTT 139547 | | || ||||| | || | |||||| ||||||| ||||||||| | || ||| Sbjct 905 ATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGG 964 Query 139548 CCGTTTGCCACCT---TGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGG 139604 |||||||| ||| ||||| |||| || | | |||||||| || |||| ||| || Sbjct 965 ACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGG 1024 Query 139605 CTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG---GGACTGTTGCGAGCTCGGAC 139661 | | | ||| | | || || || |||| | ||| | | ||| || || | Sbjct 1025 CACTAAACCATTAGAGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTG---GCGCGTAT 1081 Query 139662 GTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAA 139721 | ||| ||||| | ||| || ||||| | | ||||| || | |||| | || Sbjct 1082 GCAATGCACATTCAGGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCTAC 1141 Query 139722 TGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAG 139781 | || | | ||||| ||| ||| | ||| |||| ||| || || || || || Sbjct 1142 GGACTTGAAAATACCCTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAG 1201 Query 139782 TTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTT 139841 ||| || || | ||| | || || || || || ||| ||||| || || | | Sbjct 1202 TTGTGGGCGTCTTGTGGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCGCTC 1261 Query 139842 CGACATCAATTCGTACGTTTCGATGGCGCTCA-CAATATCCCTTCCGTGGATACCGACAG 139900 || | || | ||| ||||| ||||| | || | |||||| ||||| || || |||| Sbjct 1262 TGATAGTAAATTGTAGGTTTCTATGGC-CGCATCGATATCCTCGCCGTGTATGCCCACAG 1320 Query 139901 AGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGAT 139960 || |||||||| | |||||| || ||| | | | || | |||||| | || Sbjct 1321 CCACACGCATCAGTAGATGTTGAGGACGCTCGACAATTTCCCCATTGATTTTCAATAAAT 1380 Query 139961 A--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCGAGCGCATAATT 140018 | | ||| || || |||||| | || ||||| ||||| || ||| | ||||| | Sbjct 1381 AGGAACGT--TCGAGTGTCTTGAATCCGAAGTAATTATAGCCAAAGTCGCGATCATAAAT 1438 Query 140019 AAT 140021 ||| Sbjct 1439 AAT 1441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449722989117720