Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq13293 132 4e-26
seq4718 123 2e-23
seq14521 120 3e-22
>seq13293
Length=1349
Score = 132 bits (146), Expect = 4e-26
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491
|||||||| | || ||||| ||||| || || || || || ||||| ||||| || |
Sbjct 214 TTGTAATCAAATTGAGTTTGAGCGCCAAGTTCACAACCAAAATACTTGGTCGGATAGGTA 155
Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551
|| |||||||| | || | || || || ||||||||| ||||| |||||||||||
Sbjct 154 GCTGGACGTCCTAAAGCTCTAGCTATATCAATCATGTTGACTATGACGGTCTTGATGCCA 95
Query 34552 TTGCCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609
|||||||| ||||| ||||| || ||||||| | ||||||||||||| ||||| | |
Sbjct 94 TTGCCCTTGCCTTCCACCTTTGCTAGCAGATGGG--GCATTTTGTAGCGATAGAAAGGAT 37
Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643
| |||| || ||||| || | || |||||
Sbjct 36 CGCTTACATAACGATTAACATTTAGAGAACCCAT 3
>seq4718
Length=1987
Score = 123 bits (136), Expect = 2e-23
Identities = 157/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491
|||||||| | || ||||| ||||| || || || || |||||||| ||||| || |
Sbjct 231 TTGTAATCAAATTGAGTTTGAGCGCCAAGTTCACAACCAAAGTACTTGGTCGGATAGGTA 290
Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551
|| |||||||| | || | || || || ||||||||| ||||| |||||||||||
Sbjct 291 GCTGGACGTCCTAAAGCTCTAGCTATATCAATCATGTTGACTATGACGGTCTTGATGCCA 350
Query 34552 TTGCCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609
|||||||| || || ||||| || | |||| | ||||| |||||||| ||||| | |
Sbjct 351 TTGCCCTTGCCCTCCACCTTTGCTAGTAGAT--GAGGCATCTTGTAGCGATAGAAAGGAT 408
Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643
| |||| || ||||| || | || |||||
Sbjct 409 CGCTGACATAACGATTAACATTTAGAGAACCCAT 442
>seq14521
Length=2880
Score = 120 bits (132), Expect = 3e-22
Identities = 156/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491
|||||||| | || ||||| ||||| || || || || || ||||| ||||| || |
Sbjct 1241 TTGTAATCAAATTGAGTTTGAGCGCCAAGTTCACAACCAAAATACTTGGTCGGATAGGTA 1182
Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551
|| |||||||| | || | || || || ||||||||| ||||| |||||||||||
Sbjct 1181 GCTGGACGTCCTAAAGCTCTAGCTATATCAATCATGTTGACAATGACGGTCTTGATGCCA 1122
Query 34552 TTGCCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609
|| ||||| || || ||||| || | ||||| | ||||||||||||| ||||| | |
Sbjct 1121 TTACCCTTGCCCTCCACCTTTGCTAGTAGATGAG--GCATTTTGTAGCGATAGAAAGGAT 1064
Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643
| |||| || ||||| || | || |||||
Sbjct 1063 CGCTGACATAACGATTAACATTTAGAGAACCCAT 1030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412685376739157
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |