Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_022343.1 Length=159991 Score E Sequences producing significant alignments: (Bits) Value seq4032 93.3 4e-14 seq1262 87.8 2e-12 >seq4032 Length=2654 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/100 (81%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 84403 GCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCTACCGACTGAACTACA 84462 ||| |||| |||| |||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 1362 GCAAGACTCGAACTTGCGACATATGGATTAACAGTCCACCGTTCTACCAACTGAACTAAA 1303 Query 84463 CCATCTCAATTCTTTGGCATCCCCTCCAGGACTCGAACCT 84502 | || || |||||| | | | |||||| |||||| Sbjct 1302 --AGGTCTTTTTTTTGGCGACTCATGTAGGACTTGAACCT 1265 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/100 (81%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 84403 GCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCTACCGACTGAACTACA 84462 ||| |||| |||| |||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 1625 GCAAGACTCGAACTTGCGACATATGGATTAACAGTCCACCGTTCTACCAACTGAACTAAA 1566 Query 84463 CCATCTCAATTCTTTGGCATCCCCTCCAGGACTCGAACCT 84502 | || || |||||| | | | |||||| |||||| Sbjct 1565 --AGGTCTTTTTTTTGGCGACTCATGTAGGACTTGAACCT 1528 >seq1262 Length=72559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84403 GCAGGACTTGAACCTGCGACATATGGATTAACAGTCCACCGTTCTACCGACTGAACTA 84460 || ||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| Sbjct 60754 GCTGGACTCGAACCAGCGACATATGGATTAACAGTCCACCGTTCTACCAACTGAACTA 60811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511644547256040